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  5. SOLTUB.AGRIA.G00000018943

SOLTUB.AGRIA.G00000018943


Description : PttA'


Gene families : OG_02_0000079 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000018943
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_136

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000001565 No alias PttA' 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005552 No alias PttA' 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000033925 No alias Cleavage and polyadenylation specificity factor subunit 1 0.02 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001565 No alias PttA' 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005552 No alias PttA' 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001565 No alias PttA' 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005552 No alias PttA' 0.06 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000315 organellar large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0000380 alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
MF GO:0002094 polyprenyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0002684 positive regulation of immune system process IEP Predict GO terms from Neighborhoods
CC GO:0002944 cyclin K-CDK12 complex IEP Predict GO terms from Neighborhoods
CC GO:0002945 cyclin K-CDK13 complex IEP Predict GO terms from Neighborhoods
MF GO:0003747 translation release factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0004310 farnesyl-diphosphate farnesyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004311 farnesyltranstransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004659 prenyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0005762 mitochondrial large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0006066 alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006415 translational termination IEP Predict GO terms from Neighborhoods
BP GO:0006573 valine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006574 valine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006695 cholesterol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006720 isoprenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006722 triterpenoid metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
CC GO:0008024 cyclin/CDK positive transcription elongation factor complex IEP Predict GO terms from Neighborhoods
MF GO:0008079 translation termination factor activity IEP Predict GO terms from Neighborhoods
BP GO:0008202 steroid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0008203 cholesterol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0008299 isoprenoid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0008395 steroid hydroxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0009083 branched-chain amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009714 chalcone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009715 chalcone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009812 flavonoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009813 flavonoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010268 brassinosteroid homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0016093 polyprenol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016094 polyprenol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016104 triterpenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016105 triterpenoid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016134 saponin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016135 saponin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016137 glycoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016138 glycoside biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016150 translation release factor activity, codon nonspecific IEP Predict GO terms from Neighborhoods
MF GO:0016210 naringenin-chalcone synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0016289 CoA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predict GO terms from Neighborhoods
BP GO:0019348 dolichol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019408 dolichol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019741 pentacyclic triterpenoid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019745 pentacyclic triterpenoid biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
MF GO:0030332 cyclin binding IEP Predict GO terms from Neighborhoods
BP GO:0030638 polyketide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030639 polyketide biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP Predict GO terms from Neighborhoods
CC GO:0034081 polyketide synthase complex IEP Predict GO terms from Neighborhoods
BP GO:0040009 regulation of growth rate IEP Predict GO terms from Neighborhoods
BP GO:0042180 cellular ketone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042181 ketone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042182 ketone catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043405 regulation of MAP kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0044283 small molecule biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0045547 dehydrodolichyl diphosphate synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0046165 alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0046409 p-coumarate 3-hydroxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0046622 positive regulation of organ growth IEP Predict GO terms from Neighborhoods
BP GO:0048437 floral organ development IEP Predict GO terms from Neighborhoods
BP GO:0048440 carpel development IEP Predict GO terms from Neighborhoods
MF GO:0050267 rubber cis-polyprenylcistransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0050778 positive regulation of immune response IEP Predict GO terms from Neighborhoods
MF GO:0051996 squalene synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0070126 mitochondrial translational termination IEP Predict GO terms from Neighborhoods
BP GO:0070816 phosphorylation of RNA polymerase II C-terminal domain IEP Predict GO terms from Neighborhoods
BP GO:0071731 response to nitric oxide IEP Predict GO terms from Neighborhoods
BP GO:0072344 rescue of stalled ribosome IEP Predict GO terms from Neighborhoods
BP GO:0090709 regulation of timing of plant organ formation IEP Predict GO terms from Neighborhoods
MF GO:0097472 cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:1901615 organic hydroxy compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901659 glycosyl compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901696 cannabinoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902381 11-oxo-beta-amyrin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902382 11-oxo-beta-amyrin catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902384 glycyrrhetinate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902386 glycyrrhetinate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902438 response to vanadate(3-) IEP Predict GO terms from Neighborhoods
BP GO:1902653 secondary alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000736 regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000737 negative regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004252 Probable_transposase_24 601 691
No external refs found!