SOLTUB.AGRIA.G00000019429

Description : Histone H3.3

Gene families : OG_02_0006080 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019429
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_10

Type	GO Term	Name	Evidence	Source
CC	GO:0000228	nuclear chromosome	None	Extended
CC	GO:0000781	chromosome, telomeric region	IEA	AHRD
CC	GO:0000786	nucleosome	IEA	AHRD
CC	GO:0000803	sex chromosome	None	Extended
CC	GO:0000805	X chromosome	None	Extended
MF	GO:0000976	transcription cis-regulatory region binding	None	Extended
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA	AHRD
MF	GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	IEA	AHRD
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0001046	core promoter sequence-specific DNA binding	None	Extended
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0001558	regulation of cell growth	None	Extended
BP	GO:0001649	osteoblast differentiation	IEA	AHRD
CC	GO:0001740	Barr body	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	IEA	AHRD
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0007281	germ cell development	None	Extended
BP	GO:0007286	spermatid development	IEA	AHRD
BP	GO:0007292	female gamete generation	None	Extended
BP	GO:0007338	single fertilization	IEA	AHRD
BP	GO:0007420	brain development	IEA	AHRD
BP	GO:0007566	embryo implantation	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008283	cell population proliferation	IEA	AHRD
BP	GO:0008406	gonad development	None	Extended
BP	GO:0008584	male gonad development	IEA	AHRD
BP	GO:0009566	fertilization	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	AHRD
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010639	negative regulation of organelle organization	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030307	positive regulation of cell growth	IEA	AHRD
CC	GO:0030875	rDNA protrusion	IEA	AHRD
MF	GO:0031490	chromatin DNA binding	None	Extended
MF	GO:0031491	nucleosome binding	None	Extended
MF	GO:0031492	nucleosomal DNA binding	IEA	AHRD
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0031508	pericentric heterochromatin formation	IEA	AHRD
BP	GO:0031509	subtelomeric heterochromatin formation	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	None	Extended
BP	GO:0035264	multicellular organism growth	IEA	AHRD
BP	GO:0040007	growth	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042692	muscle cell differentiation	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043254	regulation of protein-containing complex assembly	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0045927	positive regulation of growth	None	Extended
MF	GO:0046982	protein heterodimerization activity	IEA	AHRD
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048477	oogenesis	IEA	AHRD
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051129	negative regulation of cellular component organization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060623	regulation of chromosome condensation	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090230	regulation of centromere complex assembly	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098687	chromosomal region	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140719	constitutive heterochromatin formation	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902340	negative regulation of chromosome condensation	IEA	AHRD
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2001251	negative regulation of chromosome organization	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000070	mitotic sister chromatid segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0000154	rRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0000451	rRNA 2'-O-methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000494	box C/D RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000578	embryonic axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0000819	sister chromatid segregation	IEP	Predict GO terms from Neighborhoods
MF	GO:0001091	RNA polymerase II general transcription initiation factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001094	TFIID-class transcription factor complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001098	basal transcription machinery binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001099	basal RNA polymerase II transcription machinery binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001221	transcription coregulator binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001223	transcription coactivator binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0001650	fibrillar center	IEP	Predict GO terms from Neighborhoods
CC	GO:0001651	dense fibrillar component	IEP	Predict GO terms from Neighborhoods
CC	GO:0001652	granular component	IEP	Predict GO terms from Neighborhoods
BP	GO:0001835	blastocyst hatching	IEP	Predict GO terms from Neighborhoods
BP	GO:0002181	cytoplasmic translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0003360	brainstem development	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004165	delta(3)-delta(2)-enoyl-CoA isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004300	enoyl-CoA hydratase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005791	rough endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
CC	GO:0005840	ribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006356	regulation of transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006403	RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006635	fatty acid beta-oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007000	nucleolus organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008692	3-hydroxybutyryl-CoA epimerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009062	fatty acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0014069	postsynaptic density	IEP	Predict GO terms from Neighborhoods
CC	GO:0015030	Cajal body	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0016045	detection of bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016074	sno(s)RNA metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016592	mediator complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016854	racemase and epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016856	racemase and epimerase activity, acting on hydroxy acids and derivatives	IEP	Predict GO terms from Neighborhoods
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016863	intramolecular oxidoreductase activity, transposing C=C bonds	IEP	Predict GO terms from Neighborhoods
BP	GO:0017126	nucleologenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0018364	peptidyl-glutamine methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0030218	erythrocyte differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030516	regulation of axon extension	IEP	Predict GO terms from Neighborhoods
BP	GO:0031100	animal organ regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0031126	sno(s)RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031397	negative regulation of protein ubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0031428	box C/D RNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031672	A band	IEP	Predict GO terms from Neighborhoods
BP	GO:0031960	response to corticosteroid	IEP	Predict GO terms from Neighborhoods
CC	GO:0032040	small-subunit processome	IEP	Predict GO terms from Neighborhoods
BP	GO:0032509	endosome transport via multivesicular body sorting pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0032986	protein-DNA complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0033967	box C/D RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034963	box C/D RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035188	hatching	IEP	Predict GO terms from Neighborhoods
MF	GO:0036009	protein-glutamine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0042788	polysomal ribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043144	sno(s)RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0043603	cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043628	small regulatory ncRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0045324	late endosome to vacuole transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0045773	positive regulation of axon extension	IEP	Predict GO terms from Neighborhoods
BP	GO:0046677	response to antibiotic	IEP	Predict GO terms from Neighborhoods
BP	GO:0048254	snoRNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0050770	regulation of axonogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050772	positive regulation of axonogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0051117	ATPase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051385	response to mineralocorticoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0051438	regulation of ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051444	negative regulation of ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0055105	ubiquitin-protein transferase inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0055106	ubiquitin-protein transferase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061387	regulation of extent of cell growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0070180	large ribosomal subunit rRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070403	NAD+ binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071236	cellular response to antibiotic	IEP	Predict GO terms from Neighborhoods
BP	GO:0071417	cellular response to organonitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0071684	organism emergence from protective structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0071985	multivesicular body sorting pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0072716	response to actinomycin D	IEP	Predict GO terms from Neighborhoods
BP	GO:0072717	cellular response to actinomycin D	IEP	Predict GO terms from Neighborhoods
BP	GO:0090351	seedling development	IEP	Predict GO terms from Neighborhoods
BP	GO:0097421	liver regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0098543	detection of other organism	IEP	Predict GO terms from Neighborhoods
CC	GO:0098552	side of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098554	cytoplasmic side of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098562	cytoplasmic side of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098813	nuclear chromosome segregation	IEP	Predict GO terms from Neighborhoods
CC	GO:0099572	postsynaptic specialization	IEP	Predict GO terms from Neighborhoods
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140296	general transcription initiation factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901699	cellular response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1901798	positive regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1903051	negative regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903321	negative regulation of protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
BP	GO:1904044	response to aldosterone	IEP	Predict GO terms from Neighborhoods
BP	GO:1904666	regulation of ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904667	negative regulation of ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1990258	histone glutamine methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:1990259	histone-glutamine methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
MF	GO:1990948	ubiquitin ligase inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000059	negative regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR009072	Histone-fold	64	107

External Links

No external refs found!

SOLTUB.AGRIA.G00000019429

Expression Profile

Co-expression Networks

Functional Annotation