1. Home
  2. Species
  3. Solanum tuberosum Agria
  4. Sequence
  5. SOLTUB.AGRIA.G00000019715

SOLTUB.AGRIA.G00000019715


Description : tRNA pseudouridine synthase


Gene families : OG_02_0014972 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019715
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_199


Type GO Term Name Evidence Source
BP GO:0009451 RNA modification IEA AHRD
MF GO:0016853 isomerase activity IEA AHRD
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0001678 cellular glucose homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0001775 cell activation IEP Predict GO terms from Neighborhoods
BP GO:0001817 regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0001818 negative regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0001819 positive regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0001932 regulation of protein phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0001934 positive regulation of protein phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0002221 pattern recognition receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0002225 positive regulation of antimicrobial peptide production IEP Predict GO terms from Neighborhoods
BP GO:0002237 response to molecule of bacterial origin IEP Predict GO terms from Neighborhoods
BP GO:0002577 regulation of antigen processing and presentation IEP Predict GO terms from Neighborhoods
BP GO:0002579 positive regulation of antigen processing and presentation IEP Predict GO terms from Neighborhoods
BP GO:0002604 regulation of dendritic cell antigen processing and presentation IEP Predict GO terms from Neighborhoods
BP GO:0002606 positive regulation of dendritic cell antigen processing and presentation IEP Predict GO terms from Neighborhoods
BP GO:0002683 negative regulation of immune system process IEP Predict GO terms from Neighborhoods
BP GO:0002694 regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002696 positive regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002697 regulation of immune effector process IEP Predict GO terms from Neighborhoods
BP GO:0002699 positive regulation of immune effector process IEP Predict GO terms from Neighborhoods
BP GO:0002700 regulation of production of molecular mediator of immune response IEP Predict GO terms from Neighborhoods
BP GO:0002702 positive regulation of production of molecular mediator of immune response IEP Predict GO terms from Neighborhoods
BP GO:0002703 regulation of leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002705 positive regulation of leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002706 regulation of lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002718 regulation of cytokine production involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002720 positive regulation of cytokine production involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002759 regulation of antimicrobial humoral response IEP Predict GO terms from Neighborhoods
BP GO:0002760 positive regulation of antimicrobial humoral response IEP Predict GO terms from Neighborhoods
BP GO:0002764 immune response-regulating signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0002784 regulation of antimicrobial peptide production IEP Predict GO terms from Neighborhoods
BP GO:0002786 regulation of antibacterial peptide production IEP Predict GO terms from Neighborhoods
BP GO:0002803 positive regulation of antibacterial peptide production IEP Predict GO terms from Neighborhoods
BP GO:0002805 regulation of antimicrobial peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0002807 positive regulation of antimicrobial peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0002808 regulation of antibacterial peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0002819 regulation of adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002822 regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002920 regulation of humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0002922 positive regulation of humoral immune response IEP Predict GO terms from Neighborhoods
MF GO:0003844 1,4-alpha-glucan branching enzyme activity IEP Predict GO terms from Neighborhoods
CC GO:0005635 nuclear envelope IEP Predict GO terms from Neighborhoods
BP GO:0005977 glycogen metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005978 glycogen biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0005982 starch metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006073 cellular glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006091 generation of precursor metabolites and energy IEP Predict GO terms from Neighborhoods
BP GO:0006112 energy reserve metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006963 positive regulation of antibacterial peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0008284 positive regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0008285 negative regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0009250 glucan biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0009501 amyloplast IEP Predict GO terms from Neighborhoods
BP GO:0009595 detection of biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009744 response to sucrose IEP Predict GO terms from Neighborhoods
BP GO:0009746 response to hexose IEP Predict GO terms from Neighborhoods
BP GO:0009749 response to glucose IEP Predict GO terms from Neighborhoods
BP GO:0009750 response to fructose IEP Predict GO terms from Neighborhoods
BP GO:0009896 positive regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010021 amylopectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010506 regulation of autophagy IEP Predict GO terms from Neighborhoods
BP GO:0010508 positive regulation of autophagy IEP Predict GO terms from Neighborhoods
BP GO:0010562 positive regulation of phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010950 positive regulation of endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0010952 positive regulation of peptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Predict GO terms from Neighborhoods
BP GO:0016239 positive regulation of macroautophagy IEP Predict GO terms from Neighborhoods
BP GO:0016241 regulation of macroautophagy IEP Predict GO terms from Neighborhoods
BP GO:0019252 starch biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0030139 endocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0030162 regulation of proteolysis IEP Predict GO terms from Neighborhoods
CC GO:0031012 extracellular matrix IEP Predict GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Predict GO terms from Neighborhoods
BP GO:0031331 positive regulation of cellular catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031333 negative regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0031396 regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0031398 positive regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0032088 negative regulation of NF-kappaB transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0032102 negative regulation of response to external stimulus IEP Predict GO terms from Neighborhoods
BP GO:0032479 regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032480 negative regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032494 response to peptidoglycan IEP Predict GO terms from Neighborhoods
BP GO:0032495 response to muramyl dipeptide IEP Predict GO terms from Neighborhoods
BP GO:0032496 response to lipopolysaccharide IEP Predict GO terms from Neighborhoods
BP GO:0032651 regulation of interleukin-1 beta production IEP Predict GO terms from Neighborhoods
BP GO:0032652 regulation of interleukin-1 production IEP Predict GO terms from Neighborhoods
BP GO:0032655 regulation of interleukin-12 production IEP Predict GO terms from Neighborhoods
BP GO:0032675 regulation of interleukin-6 production IEP Predict GO terms from Neighborhoods
BP GO:0032680 regulation of tumor necrosis factor production IEP Predict GO terms from Neighborhoods
BP GO:0032715 negative regulation of interleukin-6 production IEP Predict GO terms from Neighborhoods
BP GO:0032720 negative regulation of tumor necrosis factor production IEP Predict GO terms from Neighborhoods
BP GO:0032755 positive regulation of interleukin-6 production IEP Predict GO terms from Neighborhoods
BP GO:0032760 positive regulation of tumor necrosis factor production IEP Predict GO terms from Neighborhoods
BP GO:0032872 regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0032874 positive regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0033500 carbohydrate homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0033674 positive regulation of kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034284 response to monosaccharide IEP Predict GO terms from Neighborhoods
BP GO:0034285 response to disaccharide IEP Predict GO terms from Neighborhoods
CC GO:0034451 centriolar satellite IEP Predict GO terms from Neighborhoods
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042110 T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0042325 regulation of phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0042327 positive regulation of phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0042593 glucose homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0043085 positive regulation of catalytic activity IEP Predict GO terms from Neighborhoods
BP GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:0043124 negative regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:0043254 regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043408 regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0043410 positive regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0043433 negative regulation of DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0043549 regulation of kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0044042 glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045321 leukocyte activation IEP Predict GO terms from Neighborhoods
CC GO:0045335 phagocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0045862 positive regulation of proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0045937 positive regulation of phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046328 regulation of JNK cascade IEP Predict GO terms from Neighborhoods
BP GO:0046330 positive regulation of JNK cascade IEP Predict GO terms from Neighborhoods
BP GO:0046649 lymphocyte activation IEP Predict GO terms from Neighborhoods
CC GO:0048471 perinuclear region of cytoplasm IEP Predict GO terms from Neighborhoods
BP GO:0050678 regulation of epithelial cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0050727 regulation of inflammatory response IEP Predict GO terms from Neighborhoods
BP GO:0050728 negative regulation of inflammatory response IEP Predict GO terms from Neighborhoods
BP GO:0050777 negative regulation of immune response IEP Predict GO terms from Neighborhoods
BP GO:0050830 defense response to Gram-positive bacterium IEP Predict GO terms from Neighborhoods
BP GO:0050865 regulation of cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050867 positive regulation of cell activation IEP Predict GO terms from Neighborhoods
BP GO:0051090 regulation of DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0051249 regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051251 positive regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051336 regulation of hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0051338 regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051341 regulation of oxidoreductase activity IEP Predict GO terms from Neighborhoods
BP GO:0051345 positive regulation of hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0051347 positive regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051353 positive regulation of oxidoreductase activity IEP Predict GO terms from Neighborhoods
BP GO:0051606 detection of stimulus IEP Predict GO terms from Neighborhoods
BP GO:0052547 regulation of peptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0052548 regulation of endopeptidase activity IEP Predict GO terms from Neighborhoods
CC GO:0062039 biofilm matrix IEP Predict GO terms from Neighborhoods
CC GO:0062040 fungal biofilm matrix IEP Predict GO terms from Neighborhoods
BP GO:0070302 regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070304 positive regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070372 regulation of ERK1 and ERK2 cascade IEP Predict GO terms from Neighborhoods
BP GO:0070374 positive regulation of ERK1 and ERK2 cascade IEP Predict GO terms from Neighborhoods
BP GO:0070887 cellular response to chemical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071216 cellular response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071219 cellular response to molecule of bacterial origin IEP Predict GO terms from Neighborhoods
BP GO:0071310 cellular response to organic substance IEP Predict GO terms from Neighborhoods
BP GO:0071322 cellular response to carbohydrate stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071324 cellular response to disaccharide stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071326 cellular response to monosaccharide stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071329 cellular response to sucrose stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071331 cellular response to hexose stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071332 cellular response to fructose stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071333 cellular response to glucose stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071417 cellular response to organonitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:0071478 cellular response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0071482 cellular response to light stimulus IEP Predict GO terms from Neighborhoods
BP GO:0098581 detection of external biotic stimulus IEP Predict GO terms from Neighborhoods
MF GO:0102752 1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis) IEP Predict GO terms from Neighborhoods
BP GO:1900015 regulation of cytokine production involved in inflammatory response IEP Predict GO terms from Neighborhoods
BP GO:1900225 regulation of NLRP3 inflammasome complex assembly IEP Predict GO terms from Neighborhoods
BP GO:1900226 negative regulation of NLRP3 inflammasome complex assembly IEP Predict GO terms from Neighborhoods
BP GO:1900424 regulation of defense response to bacterium IEP Predict GO terms from Neighborhoods
BP GO:1900426 positive regulation of defense response to bacterium IEP Predict GO terms from Neighborhoods
BP GO:1901222 regulation of NIK/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:1901223 negative regulation of NIK/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:1901652 response to peptide IEP Predict GO terms from Neighborhoods
BP GO:1901699 cellular response to nitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:1901701 cellular response to oxygen-containing compound IEP Predict GO terms from Neighborhoods
BP GO:1902532 negative regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:1902533 positive regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:1903320 regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1903322 positive regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1903555 regulation of tumor necrosis factor superfamily cytokine production IEP Predict GO terms from Neighborhoods
BP GO:1903556 negative regulation of tumor necrosis factor superfamily cytokine production IEP Predict GO terms from Neighborhoods
BP GO:1903557 positive regulation of tumor necrosis factor superfamily cytokine production IEP Predict GO terms from Neighborhoods
BP GO:1904415 regulation of xenophagy IEP Predict GO terms from Neighborhoods
BP GO:1904417 positive regulation of xenophagy IEP Predict GO terms from Neighborhoods
BP GO:2000116 regulation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:2000896 amylopectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2001056 positive regulation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR020103 PsdUridine_synth_cat_dom_sf 45 304
IPR001406 PsdUridine_synth_TruA 48 281
IPR020097 PsdUridine_synth_TruA_a/b_dom 52 151
IPR020097 PsdUridine_synth_TruA_a/b_dom 191 298
No external refs found!