SOLTUB.AGRIA.G00000019925

Description : Kin17 DNA-binding family protein

Gene families : OG_02_0004640 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019925
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_226

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	AHRD
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	AHRD
BP	GO:0006281	DNA repair	IEA	AHRD
BP	GO:0006310	DNA recombination	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009267	cellular response to starvation	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
CC	GO:0016363	nuclear matrix	IEA	AHRD
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IEA	AHRD
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
CC	GO:0032991	protein-containing complex	IEA	AHRD
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035874	cellular response to copper ion starvation	IEA	AHRD
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042594	response to starvation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048638	regulation of developmental growth	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120126	response to copper ion starvation	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0000123	histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000372	Group I intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predict GO terms from Neighborhoods
BP	GO:0000376	RNA splicing, via transesterification reactions with guanosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000380	alternative mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0000386	second spliceosomal transesterification activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000389	mRNA 3'-splice site recognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0000791	euchromatin	IEP	Predict GO terms from Neighborhoods
BP	GO:0000820	regulation of glutamine family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0000974	Prp19 complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0000993	RNA polymerase II complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001098	basal transcription machinery binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001099	basal RNA polymerase II transcription machinery binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001501	skeletal system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001654	eye development	IEP	Predict GO terms from Neighborhoods
CC	GO:0005671	obsolete Ada2/Gcn5/Ada3 transcription activator complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005684	U2-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005703	polytene chromosome puff	IEP	Predict GO terms from Neighborhoods
CC	GO:0005705	polytene chromosome interband	IEP	Predict GO terms from Neighborhoods
BP	GO:0006111	regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Predict GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0006521	regulation of cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007095	mitotic G2 DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0007369	gastrulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007423	sensory organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007482	haltere development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007507	heart development	IEP	Predict GO terms from Neighborhoods
CC	GO:0008023	transcription elongation factor complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008284	positive regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0010676	positive regulation of cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010906	regulation of glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010907	positive regulation of glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010972	negative regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0015030	Cajal body	IEP	Predict GO terms from Neighborhoods
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0030628	pre-mRNA 3'-splice site binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031061	negative regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031426	polycistronic mRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0031491	nucleosome binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0033238	regulation of cellular amine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033239	negative regulation of cellular amine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
CC	GO:0034657	GID complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0035064	methylated histone binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0035101	FACT complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0036002	pre-mRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042058	regulation of epidermal growth factor receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0042059	negative regulation of epidermal growth factor receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0042127	regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Predict GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Predict GO terms from Neighborhoods
MF	GO:0042800	histone methyltransferase activity (H3-K4 specific)	IEP	Predict GO terms from Neighborhoods
BP	GO:0043162	ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0043175	RNA polymerase core enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043966	histone H3 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043967	histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043981	histone H4-K5 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043982	histone H4-K8 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043984	histone H4-K16 acetylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0044545	NSL complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0044665	MLL1/2 complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0044666	MLL3/4 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0044773	mitotic DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044774	mitotic DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044818	mitotic G2/M transition checkpoint	IEP	Predict GO terms from Neighborhoods
MF	GO:0045309	protein phosphorylated amino acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0045722	positive regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045763	negative regulation of cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045913	positive regulation of carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047485	protein N-terminus binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0048188	Set1C/COMPASS complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0048568	embryonic organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048736	appendage development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048737	imaginal disc-derived appendage development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050815	phosphoserine residue binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051219	phosphoprotein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051569	regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051571	positive regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051572	negative regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0062014	negative regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0070063	RNA polymerase binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070742	C2H2 zinc finger domain binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0071005	U2-type precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071011	precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071014	post-mRNA release spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071339	MLL1 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071629	cytoplasm protein quality control by the ubiquitin-proteasome system	IEP	Predict GO terms from Neighborhoods
BP	GO:0090378	seed trichome elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0099122	RNA polymerase II C-terminal domain binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140034	methylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0140040	mitochondrial polycistronic RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0140455	cytoplasm protein quality control	IEP	Predict GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1901184	regulation of ERBB signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1901185	negative regulation of ERBB signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1902005	regulation of proline biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902006	negative regulation of proline biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1902562	H4 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902750	negative regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
MF	GO:1990269	RNA polymerase II C-terminal domain phosphoserine binding	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000214	regulation of proline metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000215	negative regulation of proline metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000282	regulation of cellular amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000283	negative regulation of cellular amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR041330	KN17_SH3	283	336
IPR036236	Znf_C2H2_sf	26	57
IPR019447	DNA/RNA-bd_Kin17_WH-like_dom	52	176

External Links

No external refs found!

SOLTUB.AGRIA.G00000019925

Expression Profile

Co-expression Networks

Functional Annotation