SOLTUB.AGRIA.G00000019973

Description : Multiple organellar rna editing factor 2, chloroplastic

Gene families : OG_02_0015016 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019973
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_118

Type	GO Term	Name	Evidence	Source
BP	GO:0000469	cleavage involved in rRNA processing	None	Extended
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	None	Extended
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0002103	endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEA	AHRD
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009657	plastid organization	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IEA	AHRD
BP	GO:0016556	mRNA modification	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0050897	cobalt ion binding	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0090501	RNA phosphodiester bond hydrolysis	None	Extended
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1900865	chloroplast RNA modification	None	Extended
BP	GO:1900871	chloroplast mRNA modification	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000303	response to superoxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0000305	response to oxygen radical	IEP	Predict GO terms from Neighborhoods
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0001817	regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0001818	negative regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0003254	regulation of membrane depolarization	IEP	Predict GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006282	regulation of DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0006471	protein ADP-ribosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007179	transforming growth factor beta receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007420	brain development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0010043	response to zinc ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010212	response to ionizing radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010332	response to gamma radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010611	regulation of cardiac muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010613	positive regulation of cardiac muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010990	regulation of SMAD protein complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0014742	positive regulation of muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
BP	GO:0014743	regulation of muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016540	protein autoprocessing	IEP	Predict GO terms from Neighborhoods
MF	GO:0016763	pentosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016922	nuclear receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0023019	signal transduction involved in regulation of gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0030331	nuclear estrogen receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030447	filamentous growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030534	adult behavior	IEP	Predict GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0030686	90S preribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0031960	response to corticosteroid	IEP	Predict GO terms from Neighborhoods
BP	GO:0032042	mitochondrial DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032204	regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032205	negative regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032206	positive regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032660	regulation of interleukin-17 production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032700	negative regulation of interleukin-17 production	IEP	Predict GO terms from Neighborhoods
BP	GO:0033143	regulation of intracellular steroid hormone receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033145	positive regulation of intracellular steroid hormone receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033146	regulation of intracellular estrogen receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033148	positive regulation of intracellular estrogen receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0034599	cellular response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0034614	cellular response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0035510	DNA dealkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0040009	regulation of growth rate	IEP	Predict GO terms from Neighborhoods
BP	GO:0042391	regulation of membrane potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0042769	obsolete DNA damage response, detection of DNA damage	IEP	Predict GO terms from Neighborhoods
MF	GO:0042826	histone deacetylase binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0043388	positive regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043502	regulation of muscle adaptation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043523	regulation of neuron apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0044030	regulation of DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044057	regulation of system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044182	filamentous growth of a population of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0044728	DNA methylation or demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045739	positive regulation of DNA repair	IEP	Predict GO terms from Neighborhoods
MF	GO:0046332	SMAD binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0046403	polynucleotide 3'-phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0046404	polydeoxyribonucleotide 5'-hydroxyl-kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046939	nucleotide phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048148	behavioral response to cocaine	IEP	Predict GO terms from Neighborhoods
BP	GO:0048545	response to steroid hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:0050879	multicellular organismal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0050881	musculoskeletal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0050882	voluntary musculoskeletal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0050905	neuromuscular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051099	positive regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051101	regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051385	response to mineralocorticoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0051604	protein maturation	IEP	Predict GO terms from Neighborhoods
MF	GO:0051731	polynucleotide 5'-hydroxyl-kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051733	polydeoxyribonucleotide kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051734	polynucleotide kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051881	regulation of mitochondrial membrane potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0051900	regulation of mitochondrial depolarization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051901	positive regulation of mitochondrial depolarization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060390	regulation of SMAD protein signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0060391	positive regulation of SMAD protein signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0070212	protein poly-ADP-ribosylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0070412	R-SMAD binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070829	obsolete heterochromatin maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0070988	demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Predict GO terms from Neighborhoods
BP	GO:0071248	cellular response to metal ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0071294	cellular response to zinc ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0071450	cellular response to oxygen radical	IEP	Predict GO terms from Neighborhoods
BP	GO:0071451	cellular response to superoxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0080111	DNA demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090092	regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090100	positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090257	regulation of muscle system process	IEP	Predict GO terms from Neighborhoods
CC	GO:0090734	site of DNA damage	IEP	Predict GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1900180	regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900182	positive regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900407	regulation of cellular response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1901214	regulation of neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:1901216	positive regulation of neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:1901653	cellular response to peptide	IEP	Predict GO terms from Neighborhoods
BP	GO:1901654	response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1902175	regulation of oxidative stress-induced intrinsic apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1902275	regulation of chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902882	regulation of response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1903201	regulation of oxidative stress-induced cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:1903203	regulation of oxidative stress-induced neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:1903376	regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1903516	regulation of single strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:1903518	positive regulation of single strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:1904044	response to aldosterone	IEP	Predict GO terms from Neighborhoods
BP	GO:1904181	positive regulation of membrane depolarization	IEP	Predict GO terms from Neighborhoods
BP	GO:1904356	regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:1904357	negative regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:1904645	response to amyloid-beta	IEP	Predict GO terms from Neighborhoods
BP	GO:1904646	cellular response to amyloid-beta	IEP	Predict GO terms from Neighborhoods
BP	GO:1904760	regulation of myofibroblast differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904762	positive regulation of myofibroblast differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:1990404	NAD+-protein ADP-ribosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000278	regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000573	positive regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000677	regulation of transcription regulatory region DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000679	positive regulation of transcription regulatory region DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000779	regulation of double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:2000781	positive regulation of double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:2001022	positive regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2001233	regulation of apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2001242	regulation of intrinsic apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2001251	negative regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:2001252	positive regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

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SOLTUB.AGRIA.G00000019973

Expression Profile

Co-expression Networks

Functional Annotation