Description : U1 small nuclear ribonucleoprotein C
Gene families : OG_02_0006119 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020256 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_26 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000243 | commitment complex | IEA | AHRD |
| BP | GO:0000387 | spliceosomal snRNP assembly | IEA | AHRD |
| BP | GO:0000395 | mRNA 5'-splice site recognition | IEA | AHRD |
| MF | GO:0003729 | mRNA binding | IEA | AHRD |
| CC | GO:0005685 | U1 snRNP | IEA | AHRD |
| MF | GO:0008270 | zinc ion binding | IEA | AHRD |
| MF | GO:0030619 | U1 snRNA binding | IEA | AHRD |
| MF | GO:0030627 | pre-mRNA 5'-splice site binding | IEA | AHRD |
| CC | GO:0071004 | U2-type prespliceosome | IEA | AHRD |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006955 | immune response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008219 | cell death | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009507 | chloroplast | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009626 | plant-type hypersensitive response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009894 | regulation of catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009895 | negative regulation of catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0012501 | programmed cell death | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016567 | protein ubiquitination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031348 | negative regulation of defense response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034050 | programmed cell death induced by symbiont | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042176 | regulation of protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042177 | negative regulation of protein catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044403 | biological process involved in symbiotic interaction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045087 | innate immune response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051248 | negative regulation of protein metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051702 | biological process involved in interaction with symbiont | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Predict GO terms from Neighborhoods |
| No external refs found! |