SOLTUB.AGRIA.G00000020400

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_02_0000025 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020400
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_118

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	None	Extended
BP	GO:0000966	RNA 5'-end processing	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004016	adenylate cyclase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009845	seed germination	IEA	AHRD
MF	GO:0009975	cyclase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016849	phosphorus-oxygen lyase activity	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090615	mitochondrial mRNA processing	None	Extended
BP	GO:0090617	mitochondrial mRNA 5'-end processing	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
MF	GO:0000822	inositol hexakisphosphate binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004326	tetrahydrofolylpolyglutamate synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008265	Mo-molybdopterin cofactor sulfurase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008841	dihydrofolate synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009000	selenocysteine lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009668	plastid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009687	abscisic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009688	abscisic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009734	auxin-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009853	photorespiration	IEP	Predict GO terms from Neighborhoods
MF	GO:0010011	auxin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0010027	thylakoid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010068	protoderm histogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010205	photoinhibition	IEP	Predict GO terms from Neighborhoods
BP	GO:0010206	photosystem II repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0010257	NADH dehydrogenase complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0012505	endomembrane system	IEP	Predict GO terms from Neighborhoods
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016783	sulfurtransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018315	molybdenum incorporation into molybdenum-molybdopterin complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030091	protein repair	IEP	Predict GO terms from Neighborhoods
MF	GO:0030151	molybdenum ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030163	protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031670	cellular response to nutrient	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032981	mitochondrial respiratory chain complex I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0033108	mitochondrial respiratory chain complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0038198	auxin receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042040	metal incorporation into metallo-molybdopterin complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042562	hormone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043155	negative regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
MF	GO:0043178	alcohol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043288	apocarotenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045013	carbon catabolite repression of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045014	carbon catabolite repression of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0045036	protein targeting to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0045037	protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0045990	carbon catabolite regulation of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0046015	regulation of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0048363	mucilage pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048443	stamen development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048564	photosystem I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051189	prosthetic group metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061984	catabolite repression	IEP	Predict GO terms from Neighborhoods
BP	GO:0061985	carbon catabolite repression	IEP	Predict GO terms from Neighborhoods
BP	GO:0061986	negative regulation of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0071249	cellular response to nitrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0071323	cellular response to chitin	IEP	Predict GO terms from Neighborhoods
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0072598	protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0090351	seedling development	IEP	Predict GO terms from Neighborhoods
MF	GO:0102867	molybdenum cofactor sulfurtransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901699	cellular response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1902170	cellular response to reactive nitrogen species	IEP	Predict GO terms from Neighborhoods
BP	GO:1902458	positive regulation of stomatal opening	IEP	Predict GO terms from Neighborhoods
BP	GO:1902644	tertiary alcohol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905156	negative regulation of photosynthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1905393	plant organ formation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	467	497
IPR002885	Pentatricopeptide_repeat	356	387
IPR002885	Pentatricopeptide_repeat	395	442
IPR002885	Pentatricopeptide_repeat	289	336
IPR002885	Pentatricopeptide_repeat	219	267
IPR002885	Pentatricopeptide_repeat	79	128
IPR002885	Pentatricopeptide_repeat	149	198
IPR002885	Pentatricopeptide_repeat	81	116
IPR002885	Pentatricopeptide_repeat	188	221
IPR002885	Pentatricopeptide_repeat	222	256
IPR002885	Pentatricopeptide_repeat	363	389
IPR002885	Pentatricopeptide_repeat	467	498
IPR002885	Pentatricopeptide_repeat	117	149
IPR002885	Pentatricopeptide_repeat	398	430
IPR002885	Pentatricopeptide_repeat	154	186
IPR002885	Pentatricopeptide_repeat	327	360
IPR002885	Pentatricopeptide_repeat	257	291
IPR002885	Pentatricopeptide_repeat	433	465
IPR002885	Pentatricopeptide_repeat	292	326

External Links

No external refs found!

SOLTUB.AGRIA.G00000020400

Expression Profile

Co-expression Networks

Functional Annotation