SOLTUB.AGRIA.G00000020410

Description : Pentatricopeptide repeat protein

Gene families : OG_02_0000025 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020410
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_118

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	None	Extended
BP	GO:0000966	RNA 5'-end processing	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004016	adenylate cyclase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009845	seed germination	IEA	AHRD
MF	GO:0009975	cyclase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016849	phosphorus-oxygen lyase activity	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090615	mitochondrial mRNA processing	None	Extended
BP	GO:0090617	mitochondrial mRNA 5'-end processing	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
MF	GO:0000822	inositol hexakisphosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0007584	response to nutrient	IEP	Predict GO terms from Neighborhoods
BP	GO:0009734	auxin-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009873	ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0010011	auxin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0010152	pollen maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010167	response to nitrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0010311	lateral root formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016036	cellular response to phosphate starvation	IEP	Predict GO terms from Neighborhoods
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031670	cellular response to nutrient	IEP	Predict GO terms from Neighborhoods
MF	GO:0038198	auxin receptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0042562	hormone binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043178	alcohol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0045013	carbon catabolite repression of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045014	carbon catabolite repression of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0045990	carbon catabolite regulation of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0046015	regulation of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0048437	floral organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048443	stamen development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061984	catabolite repression	IEP	Predict GO terms from Neighborhoods
BP	GO:0061985	carbon catabolite repression	IEP	Predict GO terms from Neighborhoods
BP	GO:0061986	negative regulation of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0071241	cellular response to inorganic substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071249	cellular response to nitrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0080022	primary root development	IEP	Predict GO terms from Neighborhoods
BP	GO:1902170	cellular response to reactive nitrogen species	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	207	256
IPR002885	Pentatricopeptide_repeat	350	394
IPR002885	Pentatricopeptide_repeat	488	534
IPR002885	Pentatricopeptide_repeat	277	325
IPR002885	Pentatricopeptide_repeat	137	186
IPR002885	Pentatricopeptide_repeat	525	558
IPR002885	Pentatricopeptide_repeat	457	488
IPR002885	Pentatricopeptide_repeat	246	279
IPR002885	Pentatricopeptide_repeat	139	173
IPR002885	Pentatricopeptide_repeat	175	206
IPR002885	Pentatricopeptide_repeat	350	383
IPR002885	Pentatricopeptide_repeat	280	314
IPR002885	Pentatricopeptide_repeat	385	418
IPR002885	Pentatricopeptide_repeat	420	447
IPR002885	Pentatricopeptide_repeat	491	523
IPR002885	Pentatricopeptide_repeat	315	348
IPR002885	Pentatricopeptide_repeat	210	244
IPR002885	Pentatricopeptide_repeat	414	445
IPR002885	Pentatricopeptide_repeat	453	479

External Links

No external refs found!

SOLTUB.AGRIA.G00000020410

Expression Profile

Co-expression Networks

Functional Annotation