SOLTUB.AGRIA.G00000020483

Description : 3'-5' ssDNA/RNA exonuclease TatD

Gene families : OG_02_0024500 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020483
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_153

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004520	endodeoxyribonuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0004529	exodeoxyribonuclease activity	None	Extended
MF	GO:0004530	deoxyribonuclease I activity	IEA	AHRD
MF	GO:0004536	deoxyribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	AHRD
BP	GO:0006308	DNA catabolic process	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008296	3'-5'-exodeoxyribonuclease activity	IEA	AHRD
MF	GO:0008408	3'-5' exonuclease activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010842	retina layer formation	IEA	AHRD
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016888	endodeoxyribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0004649	poly(ADP-ribose) glycohydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0005996	monosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006163	purine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006282	regulation of DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009259	ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010118	stomatal movement	IEP	Predict GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0019200	carbohydrate kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019693	ribose phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031056	regulation of histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046034	ATP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072521	purine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090332	stomatal closure	IEP	Predict GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1990966	ATP generation from poly-ADP-D-ribose	IEP	Predict GO terms from Neighborhoods
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR032466	Metal_Hydrolase	13	285
IPR001130	TatD-like	14	284

External Links

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SOLTUB.AGRIA.G00000020483

Expression Profile

Co-expression Networks

Functional Annotation