SOLTUB.AGRIA.G00000020655

Description : pentatricopeptide (PPR) repeat-containing protein

Gene families : OG_02_0000025 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020655
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_176

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	None	Extended
BP	GO:0000966	RNA 5'-end processing	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004016	adenylate cyclase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
MF	GO:0009975	cyclase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016849	phosphorus-oxygen lyase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090615	mitochondrial mRNA processing	None	Extended
BP	GO:0090617	mitochondrial mRNA 5'-end processing	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003825	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004805	trehalose-phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005946	alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)	IEP	Predict GO terms from Neighborhoods
BP	GO:0005984	disaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005991	trehalose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005992	trehalose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009311	oligosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009756	carbohydrate mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0010101	post-embryonic root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010102	lateral root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010182	sugar mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0016553	base conversion or substitution editing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016554	cytidine to uridine editing	IEP	Predict GO terms from Neighborhoods
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022413	reproductive process in single-celled organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0030435	sporulation resulting in formation of a cellular spore	IEP	Predict GO terms from Neighborhoods
BP	GO:0030437	ascospore formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030447	filamentous growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034293	sexual sporulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034599	cellular response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0036168	filamentous growth of a population of unicellular organisms in response to heat	IEP	Predict GO terms from Neighborhoods
BP	GO:0036180	filamentous growth of a population of unicellular organisms in response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0043935	sexual sporulation resulting in formation of a cellular spore	IEP	Predict GO terms from Neighborhoods
BP	GO:0044182	filamentous growth of a population of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070413	trehalose metabolism in response to stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0102986	trehalose synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140547	acquisition of seed longevity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	230	285
IPR002885	Pentatricopeptide_repeat	350	382
IPR002885	Pentatricopeptide_repeat	245	278
IPR002885	Pentatricopeptide_repeat	455	487
IPR002885	Pentatricopeptide_repeat	176	208
IPR002885	Pentatricopeptide_repeat	139	172
IPR002885	Pentatricopeptide_repeat	489	522
IPR002885	Pentatricopeptide_repeat	279	313
IPR002885	Pentatricopeptide_repeat	103	138
IPR002885	Pentatricopeptide_repeat	421	453
IPR002885	Pentatricopeptide_repeat	314	347
IPR002885	Pentatricopeptide_repeat	384	414
IPR002885	Pentatricopeptide_repeat	209	243
IPR002885	Pentatricopeptide_repeat	489	519
IPR002885	Pentatricopeptide_repeat	307	338
IPR002885	Pentatricopeptide_repeat	171	220
IPR002885	Pentatricopeptide_repeat	101	150
IPR002885	Pentatricopeptide_repeat	346	395
IPR002885	Pentatricopeptide_repeat	417	464

External Links

No external refs found!

SOLTUB.AGRIA.G00000020655

Expression Profile

Co-expression Networks

Functional Annotation