SOLTUB.AGRIA.G00000020826

Description : nuclear factor Y, subunit C10

Gene families : OG_02_0006148 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020826
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_171

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005657	replication fork	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	AHRD
BP	GO:0006270	DNA replication initiation	None	Extended
BP	GO:0006271	DNA strand elongation involved in DNA replication	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008047	enzyme activator activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0008622	epsilon DNA polymerase complex	IEA	AHRD
CC	GO:0008623	CHRAC	IEA	AHRD
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022616	DNA strand elongation	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030337	DNA polymerase processivity factor activity	IEA	AHRD
CC	GO:0031010	ISWI-type complex	None	Extended
BP	GO:0031507	heterochromatin formation	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
CC	GO:0042575	DNA polymerase complex	None	Extended
BP	GO:0042766	obsolete nucleosome mobilization	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043596	nuclear replication fork	IEA	AHRD
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046982	protein heterodimerization activity	IEA	AHRD
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
CC	GO:0070603	SWI/SNF superfamily-type complex	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071163	DNA replication preinitiation complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:0140529	CMG complex assembly	IEA	AHRD
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1902292	cell cycle DNA replication initiation	None	Extended
BP	GO:1902296	DNA strand elongation involved in cell cycle DNA replication	None	Extended
BP	GO:1902315	nuclear cell cycle DNA replication initiation	None	Extended
BP	GO:1902319	DNA strand elongation involved in nuclear cell cycle DNA replication	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902975	mitotic DNA replication initiation	IEA	AHRD
BP	GO:1902983	DNA strand elongation involved in mitotic DNA replication	IEA	AHRD
BP	GO:1903047	mitotic cell cycle process	None	Extended
CC	GO:1904949	ATPase complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0001671	ATPase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001732	formation of cytoplasmic translation initiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0001825	blastocyst formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005685	U1 snRNP	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006446	regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006839	mitochondrial transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008360	regulation of cell shape	IEP	Predict GO terms from Neighborhoods
BP	GO:0009786	regulation of asymmetric cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016363	nuclear matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0016592	mediator complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0030018	Z disc	IEP	Predict GO terms from Neighborhoods
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
MF	GO:0030527	structural constituent of chromatin	IEP	Predict GO terms from Neighborhoods
CC	GO:0032545	CURI complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0033290	eukaryotic 48S preinitiation complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034456	UTP-C complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042255	ribosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0042256	mature ribosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045292	mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0051302	regulation of cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0070585	protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
CC	GO:0070993	translation preinitiation complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071004	U2-type prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071010	prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071011	precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140677	molecular function activator activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003958	CBFA_NFYB_domain	342	405
IPR009072	Histone-fold	323	420

External Links

No external refs found!

SOLTUB.AGRIA.G00000020826

Expression Profile

Co-expression Networks

Functional Annotation