1. Home
  2. Species
  3. Solanum tuberosum Agria
  4. Sequence
  5. SOLTUB.AGRIA.G00000020853

SOLTUB.AGRIA.G00000020853


Description : Plant transposase (Ptta/En/Spm family)


Gene families : OG_02_0000331 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020853
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_59

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000015093 No alias Unknown protein 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000030526 No alias Unknown protein 0.04 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000015093 No alias Unknown protein 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000030526 No alias Unknown protein 0.04 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000015093 No alias Unknown protein 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000030526 No alias Unknown protein 0.04 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000255 allantoin metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0000400 four-way junction DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000403 Y-form DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000405 bubble DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0000731 DNA synthesis involved in DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0001325 formation of extrachromosomal circular DNA IEP Predict GO terms from Neighborhoods
MF GO:0004854 xanthine dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0004855 xanthine oxidase activity IEP Predict GO terms from Neighborhoods
BP GO:0005983 starch catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006012 galactose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006144 purine nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006145 purine nucleobase catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006147 guanine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006152 purine nucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006195 purine nucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006268 DNA unwinding involved in DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006284 base-excision repair IEP Predict GO terms from Neighborhoods
BP GO:0006801 superoxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007568 aging IEP Predict GO terms from Neighborhoods
BP GO:0009114 hypoxanthine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009115 xanthine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009119 ribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009120 deoxyribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009125 nucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009128 purine nucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009151 purine deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009154 purine ribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009155 purine deoxyribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009158 ribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009159 deoxyribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009162 deoxyribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009164 nucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009169 purine ribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009170 purine deoxyribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009172 purine deoxyribonucleoside monophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009261 ribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0009378 four-way junction helicase activity IEP Predict GO terms from Neighborhoods
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0009501 amyloplast IEP Predict GO terms from Neighborhoods
CC GO:0009569 chloroplast starch grain IEP Predict GO terms from Neighborhoods
BP GO:0009660 amyloplast organization IEP Predict GO terms from Neighborhoods
MF GO:0009702 L-arabinokinase activity IEP Predict GO terms from Neighborhoods
BP GO:0010021 amylopectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010044 response to aluminum ion IEP Predict GO terms from Neighborhoods
BP GO:0010225 response to UV-C IEP Predict GO terms from Neighborhoods
BP GO:0010259 multicellular organism aging IEP Predict GO terms from Neighborhoods
BP GO:0010272 response to silver ion IEP Predict GO terms from Neighborhoods
CC GO:0010368 chloroplast isoamylase complex IEP Predict GO terms from Neighborhoods
BP GO:0016105 triterpenoid catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0016607 nuclear speck IEP Predict GO terms from Neighborhoods
MF GO:0016623 oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Predict GO terms from Neighborhoods
MF GO:0016662 oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predict GO terms from Neighborhoods
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016727 oxidoreductase activity, acting on CH or CH2 groups, oxygen as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0017116 single-stranded DNA helicase activity IEP Predict GO terms from Neighborhoods
CC GO:0017117 single-stranded DNA-dependent ATP-dependent DNA helicase complex IEP Predict GO terms from Neighborhoods
MF GO:0019156 isoamylase activity IEP Predict GO terms from Neighborhoods
MF GO:0019200 carbohydrate kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0019321 pentose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019566 arabinose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019692 deoxyribose phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019741 pentacyclic triterpenoid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019745 pentacyclic triterpenoid biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predict GO terms from Neighborhoods
CC GO:0030123 AP-3 adaptor complex IEP Predict GO terms from Neighborhoods
BP GO:0030856 regulation of epithelial cell differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030894 replisome IEP Predict GO terms from Neighborhoods
CC GO:0030897 HOPS complex IEP Predict GO terms from Neighborhoods
BP GO:0031297 replication fork processing IEP Predict GO terms from Neighborhoods
BP GO:0032201 telomere maintenance via semi-conservative replication IEP Predict GO terms from Neighborhoods
MF GO:0032356 oxidized DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0032357 oxidized purine DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0032404 mismatch repair complex binding IEP Predict GO terms from Neighborhoods
MF GO:0032405 MutLalpha complex binding IEP Predict GO terms from Neighborhoods
CC GO:0033202 DNA helicase complex IEP Predict GO terms from Neighborhoods
BP GO:0034058 endosomal vesicle fusion IEP Predict GO terms from Neighborhoods
BP GO:0034465 response to carbon monoxide IEP Predict GO terms from Neighborhoods
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0036310 ATP-dependent DNA/DNA annealing activity IEP Predict GO terms from Neighborhoods
BP GO:0040009 regulation of growth rate IEP Predict GO terms from Neighborhoods
BP GO:0042278 purine nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042454 ribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042554 superoxide anion generation IEP Predict GO terms from Neighborhoods
CC GO:0043033 isoamylase complex IEP Predict GO terms from Neighborhoods
CC GO:0043036 starch grain IEP Predict GO terms from Neighborhoods
MF GO:0043138 3'-5' DNA helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0043546 molybdopterin cofactor binding IEP Predict GO terms from Neighborhoods
CC GO:0043590 bacterial nucleoid IEP Predict GO terms from Neighborhoods
BP GO:0044262 cellular carbohydrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044806 G-quadruplex DNA unwinding IEP Predict GO terms from Neighborhoods
BP GO:0046098 guanine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046100 hypoxanthine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046110 xanthine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046113 nucleobase catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046121 deoxyribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046122 purine deoxyribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046124 purine deoxyribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046128 purine ribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046130 purine ribonucleoside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046386 deoxyribose phosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046835 carbohydrate phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0046898 response to cycloheximide IEP Predict GO terms from Neighborhoods
MF GO:0050421 nitrite reductase (NO-forming) activity IEP Predict GO terms from Neighborhoods
MF GO:0050595 7-deoxyloganin 7-hydroxylase activity IEP Predict GO terms from Neighborhoods
MF GO:0050616 secologanin synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0051880 G-quadruplex DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0060542 regulation of strand invasion IEP Predict GO terms from Neighborhoods
MF GO:0061749 forked DNA-dependent helicase activity IEP Predict GO terms from Neighborhoods
BP GO:0061820 telomeric D-loop disassembly IEP Predict GO terms from Neighborhoods
MF GO:0061821 telomeric D-loop binding IEP Predict GO terms from Neighborhoods
MF GO:0061849 telomeric G-quadruplex DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0062037 D-loop DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0070336 flap-structured DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0070337 3'-flap-structured DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0070555 response to interleukin-1 IEP Predict GO terms from Neighborhoods
BP GO:0071217 cellular response to external biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071347 cellular response to interleukin-1 IEP Predict GO terms from Neighborhoods
BP GO:0071356 cellular response to tumor necrosis factor IEP Predict GO terms from Neighborhoods
BP GO:0071480 cellular response to gamma radiation IEP Predict GO terms from Neighborhoods
BP GO:0072523 purine-containing compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090399 replicative senescence IEP Predict GO terms from Neighborhoods
BP GO:0090656 t-circle formation IEP Predict GO terms from Neighborhoods
BP GO:0090657 telomeric loop disassembly IEP Predict GO terms from Neighborhoods
BP GO:0097184 response to azide IEP Predict GO terms from Neighborhoods
BP GO:0098530 positive regulation of strand invasion IEP Predict GO terms from Neighborhoods
MF GO:0098809 nitrite reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0140666 annealing activity IEP Predict GO terms from Neighborhoods
BP GO:1902381 11-oxo-beta-amyrin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902382 11-oxo-beta-amyrin catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902384 glycyrrhetinate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902386 glycyrrhetinate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902570 protein localization to nucleolus IEP Predict GO terms from Neighborhoods
MF GO:1905773 8-hydroxy-2'-deoxyguanosine DNA binding IEP Predict GO terms from Neighborhoods
MF GO:1990814 DNA/DNA annealing activity IEP Predict GO terms from Neighborhoods
BP GO:2000896 amylopectin metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004252 Probable_transposase_24 322 451
No external refs found!