SOLTUB.AGRIA.G00000020874

Description : Pentatricopeptide repeat-containing protein At2g28050

Gene families : OG_02_0022743 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020874
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_118

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090615	mitochondrial mRNA processing	None	Extended
BP	GO:0090617	mitochondrial mRNA 5'-end processing	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0000966	RNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0001664	G protein-coupled receptor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004016	adenylate cyclase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0016073	snRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016180	snRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0032039	integrator complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034472	snRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035967	cellular response to topologically incorrect protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:0051788	response to misfolded protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0071218	cellular response to misfolded protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0071479	cellular response to ionizing radiation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	293	316
IPR002885	Pentatricopeptide_repeat	392	420
IPR002885	Pentatricopeptide_repeat	147	179
IPR002885	Pentatricopeptide_repeat	357	389
IPR002885	Pentatricopeptide_repeat	217	250
IPR002885	Pentatricopeptide_repeat	392	424
IPR002885	Pentatricopeptide_repeat	322	354
IPR002885	Pentatricopeptide_repeat	220	262
IPR002885	Pentatricopeptide_repeat	319	367
IPR002885	Pentatricopeptide_repeat	147	185

External Links

No external refs found!

SOLTUB.AGRIA.G00000020874

Expression Profile

Co-expression Networks

Functional Annotation