SOLTUB.AGRIA.G00000021052

Description : U4/U6 small nuclear ribonucleoprotein Prp3

Gene families : OG_02_0022758 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000021052
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_221

Type	GO Term	Name	Evidence	Source
BP	GO:0000244	spliceosomal tri-snRNP complex assembly	IEA	AHRD
BP	GO:0000387	spliceosomal snRNP assembly	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	None	Extended
CC	GO:0005684	U2-type spliceosomal complex	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015030	Cajal body	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
CC	GO:0030532	small nuclear ribonucleoprotein complex	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044030	regulation of DNA methylation	IEA	AHRD
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0071005	U2-type precatalytic spliceosome	IEA	AHRD
CC	GO:0071011	precatalytic spliceosome	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0097525	spliceosomal snRNP complex	None	Extended
CC	GO:0097526	spliceosomal tri-snRNP complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120114	Sm-like protein family complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000348	mRNA branch site recognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Predict GO terms from Neighborhoods
MF	GO:0000386	second spliceosomal transesterification activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000389	mRNA 3'-splice site recognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0001662	behavioral fear response	IEP	Predict GO terms from Neighborhoods
MF	GO:0001671	ATPase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001732	formation of cytoplasmic translation initiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0002209	behavioral defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0003012	muscle system process	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004558	alpha-1,4-glucosidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0006417	regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006446	regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006458	'de novo' protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006491	N-glycan processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006936	muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0006941	striated muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0006986	response to unfolded protein	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009100	glycoprotein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010507	negative regulation of autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010594	regulation of endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010596	negative regulation of endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010628	positive regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010632	regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010633	negative regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010799	regulation of peptidyl-threonine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010801	negative regulation of peptidyl-threonine phosphorylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0016281	eukaryotic translation initiation factor 4F complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0016282	eukaryotic 43S preinitiation complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0017177	glucosidase II complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0030097	hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030244	cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0030276	clathrin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030336	negative regulation of cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0030433	ubiquitin-dependent ERAD pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0030544	Hsp70 protein binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031248	protein acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031288	sorocarp morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032056	positive regulation of translation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0033290	eukaryotic 48S preinitiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033555	multicellular organismal response to stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0033919	glucan 1,3-alpha-glucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0034399	nuclear periphery	IEP	Predict GO terms from Neighborhoods
CC	GO:0035097	histone methyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0035966	response to topologically incorrect protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0035967	cellular response to topologically incorrect protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0036490	regulation of translation in response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0036493	positive regulation of translation in response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0040013	negative regulation of locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0040020	regulation of meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0042026	protein refolding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042596	fear response	IEP	Predict GO terms from Neighborhoods
BP	GO:0043555	regulation of translation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0043967	histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045664	regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045666	positive regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045836	positive regulation of meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0050905	neuromuscular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051084	'de novo' post-translational protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051085	chaperone cofactor-dependent protein refolding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051087	chaperone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051261	protein depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051445	regulation of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051446	positive regulation of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051785	positive regulation of nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051788	response to misfolded protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0060216	definitive hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060631	regulation of meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0060903	positive regulation of meiosis I	IEP	Predict GO terms from Neighborhoods
CC	GO:0070993	translation preinitiation complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071218	cellular response to misfolded protein	IEP	Predict GO terms from Neighborhoods
CC	GO:0071540	eukaryotic translation initiation factor 3 complex, eIF3e	IEP	Predict GO terms from Neighborhoods
CC	GO:0071541	eukaryotic translation initiation factor 3 complex, eIF3m	IEP	Predict GO terms from Neighborhoods
BP	GO:0072318	clathrin coat disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0072319	vesicle uncoating	IEP	Predict GO terms from Neighborhoods
BP	GO:0072583	clathrin-dependent endocytosis	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090083	regulation of inclusion body assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0090084	negative regulation of inclusion body assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0090599	alpha-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0090600	alpha-1,3-glucosidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0098794	postsynapse	IEP	Predict GO terms from Neighborhoods
MF	GO:0140677	molecular function activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902415	regulation of mRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1902416	positive regulation of mRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:1902493	acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1905214	regulation of RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1905216	positive regulation of RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1905610	regulation of mRNA cap binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1905612	positive regulation of mRNA cap binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1905618	obsolete positive regulation of miRNA-mediated gene silencing by inhibition of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000146	negative regulation of cell motility	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR010541	Prp3_C	692	819
IPR013881	Pre-mRNA_splic_Prp3	437	666

External Links

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SOLTUB.AGRIA.G00000021052

Expression Profile

Co-expression Networks

Functional Annotation