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  5. SOLTUB.AGRIA.G00000021124

SOLTUB.AGRIA.G00000021124


Description : PttA'


Gene families : OG_02_0000079 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000021124
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_136

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000001565 No alias PttA' 0.08 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005552 No alias PttA' 0.08 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000033925 No alias Cleavage and polyadenylation specificity factor subunit 1 0.02 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001565 No alias PttA' 0.08 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005552 No alias PttA' 0.08 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000033925 No alias Cleavage and polyadenylation specificity factor subunit 1 0.02 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001565 No alias PttA' 0.08 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005552 No alias PttA' 0.08 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000033925 No alias Cleavage and polyadenylation specificity factor subunit 1 0.02 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000315 organellar large ribosomal subunit IEP Predict GO terms from Neighborhoods
MF GO:0002094 polyprenyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0003747 translation release factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0004659 prenyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0005762 mitochondrial large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0006415 translational termination IEP Predict GO terms from Neighborhoods
BP GO:0006573 valine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006574 valine catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008079 translation termination factor activity IEP Predict GO terms from Neighborhoods
MF GO:0008395 steroid hydroxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0009081 branched-chain amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009083 branched-chain amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009668 plastid membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0009714 chalcone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009715 chalcone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009812 flavonoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009813 flavonoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010268 brassinosteroid homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0016093 polyprenol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016094 polyprenol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016104 triterpenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016105 triterpenoid catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016150 translation release factor activity, codon nonspecific IEP Predict GO terms from Neighborhoods
MF GO:0016210 naringenin-chalcone synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0016289 CoA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016790 thiolester hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0019348 dolichol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019408 dolichol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019741 pentacyclic triterpenoid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019742 pentacyclic triterpenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019745 pentacyclic triterpenoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0030638 polyketide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030639 polyketide biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0034081 polyketide synthase complex IEP Predict GO terms from Neighborhoods
BP GO:0040009 regulation of growth rate IEP Predict GO terms from Neighborhoods
BP GO:0042180 cellular ketone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042181 ketone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042182 ketone catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044282 small molecule catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0045547 dehydrodolichyl diphosphate synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0046409 p-coumarate 3-hydroxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0046622 positive regulation of organ growth IEP Predict GO terms from Neighborhoods
MF GO:0050267 rubber cis-polyprenylcistransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0070126 mitochondrial translational termination IEP Predict GO terms from Neighborhoods
BP GO:0072344 rescue of stalled ribosome IEP Predict GO terms from Neighborhoods
BP GO:0090709 regulation of timing of plant organ formation IEP Predict GO terms from Neighborhoods
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901696 cannabinoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902381 11-oxo-beta-amyrin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902382 11-oxo-beta-amyrin catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902384 glycyrrhetinate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902386 glycyrrhetinate biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004252 Probable_transposase_24 449 513
No external refs found!