| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000723 | telomere maintenance | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000976 | transcription cis-regulatory region binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000987 | cis-regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001046 | core promoter sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001067 | transcription regulatory region nucleic acid binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001216 | DNA-binding transcription activator activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003677 | DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005634 | nucleus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005667 | transcription regulator complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006521 | regulation of cellular amino acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008300 | isoprenoid catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009269 | response to desiccation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009270 | response to humidity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009534 | chloroplast thylakoid | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009579 | thylakoid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009611 | response to wounding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009627 | systemic acquired resistance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009631 | cold acclimation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009685 | gibberellin metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009838 | abscission | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009845 | seed germination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009873 | ethylene-activated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009913 | epidermal cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009956 | radial pattern formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009960 | endosperm development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009962 | regulation of flavonoid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009963 | positive regulation of flavonoid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010093 | specification of floral organ identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010115 | regulation of abscisic acid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010162 | seed dormancy process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010226 | response to lithium ion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010228 | vegetative to reproductive phase transition of meristem | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010311 | lateral root formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010371 | regulation of gibberellin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010377 | guard cell fate commitment | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010444 | guard mother cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010449 | root meristem growth | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010468 | regulation of gene expression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010492 | maintenance of shoot apical meristem identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010565 | regulation of cellular ketone metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010581 | regulation of starch biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0014070 | response to organic cyclic compound | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0014074 | response to purine-containing compound | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016042 | lipid catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016101 | diterpenoid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016103 | diterpenoid catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016115 | terpenoid catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019747 | regulation of isoprenoid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022611 | dormancy process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030154 | cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030855 | epithelial cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031056 | regulation of histone modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031057 | negative regulation of histone modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031060 | regulation of histone methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031061 | negative regulation of histone methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031347 | regulation of defense response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031537 | regulation of anthocyanin metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031539 | positive regulation of anthocyanin metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031540 | regulation of anthocyanin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031542 | positive regulation of anthocyanin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031976 | plastid thylakoid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032101 | regulation of response to external stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032104 | regulation of response to extracellular stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032106 | positive regulation of response to extracellular stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032107 | regulation of response to nutrient levels | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032109 | positive regulation of response to nutrient levels | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032200 | telomere organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033198 | response to ATP | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033238 | regulation of cellular amine metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035266 | meristem growth | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0040019 | positive regulation of embryonic development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042538 | hyperosmotic salinity response | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0042803 | protein homodimerization activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043618 | regulation of transcription from RNA polymerase II promoter in response to stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043619 | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043620 | regulation of DNA-templated transcription in response to stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044242 | cellular lipid catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045165 | cell fate commitment | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045487 | gibberellin catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045892 | negative regulation of DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045893 | positive regulation of DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045995 | regulation of embryonic development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046683 | response to organophosphorus | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046983 | protein dimerization activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048317 | seed morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048481 | plant ovule development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048519 | negative regulation of biological process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048580 | regulation of post-embryonic development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048658 | anther wall tapetum development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048831 | regulation of shoot system development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0050525 | cutinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050793 | regulation of developmental process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050826 | response to freezing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051090 | regulation of DNA-binding transcription factor activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051094 | positive regulation of developmental process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051260 | protein homooligomerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051262 | protein tetramerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051289 | protein homotetramerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051782 | negative regulation of cell division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0055062 | phosphate ion homeostasis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0055081 | anion homeostasis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060771 | phyllotactic patterning | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060772 | leaf phyllotactic patterning | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060774 | auxin mediated signaling pathway involved in phyllotactic patterning | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060860 | regulation of floral organ abscission | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0061085 | regulation of histone H3-K27 methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0061086 | negative regulation of histone H3-K27 methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0062012 | regulation of small molecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071318 | cellular response to ATP | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0072506 | trivalent inorganic anion homeostasis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080040 | positive regulation of cellular response to phosphate starvation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080050 | regulation of seed development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090357 | regulation of tryptophan metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090547 | response to low humidity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090627 | plant epidermal cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090701 | specification of plant organ identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097548 | seed abscission | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0106167 | extracellular ATP signaling | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140110 | transcription regulator activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140255 | regulation of cellular response to phosphate starvation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902930 | regulation of alcohol biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1990110 | callus formation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:1990837 | sequence-specific double-stranded DNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000014 | regulation of endosperm development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000022 | regulation of jasmonic acid mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000026 | regulation of multicellular organismal development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000038 | regulation of stomatal complex development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000068 | regulation of defense response to insect | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000904 | regulation of starch metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |