SOLTUB.AGRIA.G00000021604

Description : SKP1 family protein

Gene families : OG_02_0009407 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000021604
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_97

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
CC	GO:0000153	cytoplasmic ubiquitin ligase complex	None	Extended
BP	GO:0000209	protein polyubiquitination	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	None	Extended
CC	GO:0005813	centrosome	IEA	AHRD
CC	GO:0005815	microtubule organizing center	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005938	cell cortex	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006513	protein monoubiquitination	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008013	beta-catenin binding	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010390	histone monoubiquitination	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016574	histone ubiquitination	None	Extended
CC	GO:0019005	SCF ubiquitin ligase complex	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019904	protein domain specific binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0030587	sorocarp development	IEA	AHRD
MF	GO:0030674	protein-macromolecule adaptor activity	None	Extended
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEA	AHRD
BP	GO:0031396	regulation of protein ubiquitination	None	Extended
BP	GO:0031398	positive regulation of protein ubiquitination	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0031467	Cul7-RING ubiquitin ligase complex	IEA	AHRD
CC	GO:0031519	PcG protein complex	IEA	AHRD
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032507	maintenance of protein location in cell	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033522	histone H2A ubiquitination	None	Extended
BP	GO:0035518	histone H2A monoubiquitination	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0043085	positive regulation of catalytic activity	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043223	cytoplasmic SCF ubiquitin ligase complex	IEA	AHRD
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044093	positive regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0045185	maintenance of protein location	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051235	maintenance of location	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051338	regulation of transferase activity	None	Extended
BP	GO:0051347	positive regulation of transferase activity	None	Extended
BP	GO:0051438	regulation of ubiquitin-protein transferase activity	None	Extended
BP	GO:0051443	positive regulation of ubiquitin-protein transferase activity	None	Extended
BP	GO:0051457	maintenance of protein location in nucleus	IEA	AHRD
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051651	maintenance of location in cell	None	Extended
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070936	protein K48-linked ubiquitination	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0071987	WD40-repeat domain binding	IEA	AHRD
BP	GO:0072595	maintenance of protein localization in organelle	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097602	cullin family protein binding	IEA	AHRD
BP	GO:0099120	socially cooperative development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140767	enzyme-substrate adaptor activity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903322	positive regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1904666	regulation of ubiquitin protein ligase activity	None	Extended
BP	GO:1904668	positive regulation of ubiquitin protein ligase activity	IEA	AHRD
CC	GO:1990234	transferase complex	None	Extended
MF	GO:1990444	F-box domain binding	IEA	AHRD
MF	GO:1990756	ubiquitin ligase-substrate adaptor activity	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005521	lamin binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005652	nuclear lamina	IEP	Predict GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005700	polytene chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005777	peroxisome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006631	fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006633	fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007031	peroxisome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007059	chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007060	male meiosis chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010032	meiotic chromosome condensation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030261	chromosome condensation	IEP	Predict GO terms from Neighborhoods
CC	GO:0042579	microbody	IEP	Predict GO terms from Neighborhoods
BP	GO:0045132	meiotic chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051299	centrosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:0061024	membrane organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0071763	nuclear membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0098813	nuclear chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903046	meiotic cell cycle process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011333	SKP1/BTB/POZ_sf	94	158
IPR016072	Skp1_comp_dimer	196	233
IPR016073	Skp1_comp_POZ	96	158
IPR036296	SKP1-like_dim_sf	170	237

External Links

No external refs found!

SOLTUB.AGRIA.G00000021604

Expression Profile

Co-expression Networks

Functional Annotation