SOLTUB.AGRIA.G00000022903

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG_02_0009658 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000022903
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_43

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002683	negative regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
BP	GO:0002832	negative regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0010363	regulation of plant-type hypersensitive response	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032102	negative regulation of response to external stimulus	None	Extended
BP	GO:0034051	negative regulation of plant-type hypersensitive response	IEA	AHRD
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045824	negative regulation of innate immune response	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050777	negative regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0001673	male germ cell nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0004565	beta-galactosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004738	pyruvate dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004739	pyruvate dehydrogenase (acetyl-transferring) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005227	calcium activated cation channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005353	fructose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005774	vacuolar membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005967	mitochondrial pyruvate dehydrogenase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006084	acetyl-CoA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006085	acetyl-CoA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006086	acetyl-CoA biosynthetic process from pyruvate	IEP	Predict GO terms from Neighborhoods
BP	GO:0006096	glycolytic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006099	tricarboxylic acid cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006757	ATP generation from ADP	IEP	Predict GO terms from Neighborhoods
BP	GO:0006995	cellular response to nitrogen starvation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008381	mechanosensitive ion channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008645	hexose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009683	indoleacetic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009743	response to carbohydrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0009759	indole glucosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009851	auxin biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0015145	monosaccharide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015149	hexose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015175	neutral amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015749	monosaccharide transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015755	fructose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015804	neutral amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015807	L-amino acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0015925	galactosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0022839	ion gated channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034486	vacuolar transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0034603	pyruvate dehydrogenase [NAD(P)+] activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034604	pyruvate dehydrogenase (NAD+) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0035384	thioester biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0035861	site of double-strand break	IEP	Predict GO terms from Neighborhoods
BP	GO:0042545	cell wall modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0042645	mitochondrial nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0043073	germ cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0045254	pyruvate dehydrogenase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0046031	ADP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048830	adventitious root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0055047	generative cell mitosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0061732	mitochondrial acetyl-CoA biosynthetic process from pyruvate	IEP	Predict GO terms from Neighborhoods
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0090734	site of DNA damage	IEP	Predict GO terms from Neighborhoods
CC	GO:0098588	bounding membrane of organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0140014	mitotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:1902334	fructose export from vacuole to cytoplasm	IEP	Predict GO terms from Neighborhoods
BP	GO:1902475	L-alpha-amino acid transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	8	68
IPR035979	RBD_domain_sf	4	81

External Links

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SOLTUB.AGRIA.G00000022903

Expression Profile

Co-expression Networks

Functional Annotation