SOLTUB.AGRIA.G00000002420

Description : GTPase obg

Gene families : OG_02_0018146 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002420
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_27

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0000287	magnesium ion binding	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IEA	AHRD
CC	GO:0009528	plastid inner membrane	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009570	chloroplast stroma	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	IEA	AHRD
BP	GO:0009668	plastid membrane organization	None	Extended
CC	GO:0009706	chloroplast inner membrane	IEA	AHRD
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010027	thylakoid membrane organization	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
CC	GO:0019866	organelle inner membrane	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031969	chloroplast membrane	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000372	Group I intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000376	RNA splicing, via transesterification reactions with guanosine as nucleophile	IEP	Predict GO terms from Neighborhoods
CC	GO:0000427	plastid-encoded plastid RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000488	maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000489	maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000963	mitochondrial RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0002097	tRNA wobble base modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003747	translation release factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004815	aspartate-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004816	asparagine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004817	cysteine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004820	glycine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004822	isoleucine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004832	valine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005047	signal recognition particle binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Predict GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006421	asparaginyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006423	cysteinyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006428	isoleucyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006431	methionyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006450	regulation of translational fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006605	protein targeting	IEP	Predict GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0007007	inner mitochondrial membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0008079	translation termination factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008312	7S RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008728	GTP diphosphokinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008893	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009295	nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0009501	amyloplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009508	plastid chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0009534	chloroplast thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009663	plasmodesma organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010239	chloroplast mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0010343	singlet oxygen-mediated programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0015949	nucleobase-containing small molecule interconversion	IEP	Predict GO terms from Neighborhoods
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016149	translation release factor activity, codon specific	IEP	Predict GO terms from Neighborhoods
MF	GO:0016688	L-ascorbate peroxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016778	diphosphotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016794	diphosphoric monoester hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
MF	GO:0016987	sigma factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018026	peptidyl-lysine monomethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022411	cellular component disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0030488	tRNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031426	polycistronic mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031976	plastid thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0032543	mitochondrial translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032544	plastid translation	IEP	Predict GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034414	tRNA 3'-trailer cleavage, endonucleolytic	IEP	Predict GO terms from Neighborhoods
BP	GO:0036473	cell death in response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0042407	cristae formation	IEP	Predict GO terms from Neighborhoods
CC	GO:0042644	chloroplast nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042646	plastid nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0042779	tRNA 3'-trailer cleavage	IEP	Predict GO terms from Neighborhoods
MF	GO:0042781	3'-tRNA processing endoribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042793	plastid transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044528	regulation of mitochondrial mRNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0045047	protein targeting to ER	IEP	Predict GO terms from Neighborhoods
BP	GO:0045216	cell-cell junction organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0046409	p-coumarate 3-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048481	plant ovule development	IEP	Predict GO terms from Neighborhoods
CC	GO:0048500	signal recognition particle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051291	protein heterooligomerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predict GO terms from Neighborhoods
BP	GO:0070206	protein trimerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070208	protein heterotrimerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0090150	establishment of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0097468	programmed cell death in response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
BP	GO:0106074	aminoacyl-tRNA metabolism involved in translational fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140040	mitochondrial polycistronic RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:1901259	chloroplast rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:1904821	chloroplast disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1905267	endonucleolytic cleavage involved in tRNA processing	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006169	GTP1_OBG_dom	223	380
IPR027417	P-loop_NTPase	373	549
IPR015349	OCT_dom	584	653
IPR036346	GTP-bd_prot_GTP1/OBG_C_sf	583	655
IPR006073	GTP-bd	383	503
IPR036726	GTP1_OBG_dom_sf	222	380
IPR014100	GTP-bd_Obg/CgtA	222	548

External Links

No external refs found!

SOLTUB.AGRIA.G00000002420

Expression Profile

Co-expression Networks

Functional Annotation