SOLTUB.AGRIA.G00000023208

Description : XH/XS domain-containing family protein

Gene families : OG_02_0020170 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000023208
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_12

Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003725	double-stranded RNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006282	regulation of DNA repair	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	IEA	AHRD
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010569	regulation of double-strand break repair via homologous recombination	IEA	AHRD
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0031047	gene silencing by RNA	None	Extended
BP	GO:0031048	small non-coding RNA-dependent heterochromatin formation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
MF	GO:0043621	protein self-association	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140718	facultative heterochromatin formation	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000779	regulation of double-strand break repair	None	Extended
BP	GO:2001020	regulation of response to DNA damage stimulus	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000045	autophagosome assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0000149	SNARE binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0000323	lytic vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0000407	phagophore assembly site	IEP	Predict GO terms from Neighborhoods
CC	GO:0001772	immunological synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0001910	regulation of leukocyte mediated cytotoxicity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001912	positive regulation of leukocyte mediated cytotoxicity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001914	regulation of T cell mediated cytotoxicity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001916	positive regulation of T cell mediated cytotoxicity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002697	regulation of immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002699	positive regulation of immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002703	regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002705	positive regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002706	regulation of lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002708	positive regulation of lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002709	regulation of T cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002711	positive regulation of T cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002819	regulation of adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002821	positive regulation of adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002822	regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	IEP	Predict GO terms from Neighborhoods
BP	GO:0002824	positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	IEP	Predict GO terms from Neighborhoods
MF	GO:0005484	SNAP receptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005764	lysosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005765	lysosomal membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005766	primary lysosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005769	early endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005798	Golgi-associated vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0006605	protein targeting	IEP	Predict GO terms from Neighborhoods
BP	GO:0006623	protein targeting to vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0006869	lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006887	exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006892	post-Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006896	Golgi to vacuole transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006906	vesicle fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007030	Golgi organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007033	vacuole organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007034	vacuolar transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007041	lysosomal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008333	endosome to lysosome transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009606	tropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009629	response to gravity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009630	gravitropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009660	amyloplast organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0009705	plant-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009959	negative gravitropism	IEP	Predict GO terms from Neighborhoods
CC	GO:0010008	endosome membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0010118	stomatal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0015850	organic hydroxy compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015918	sterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016050	vesicle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0016079	synaptic vesicle exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0016197	endosomal transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016247	channel regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016482	cytosolic transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0017081	chloride channel regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019869	chloride channel inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019905	syntaxin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022406	membrane docking	IEP	Predict GO terms from Neighborhoods
BP	GO:0023061	signal release	IEP	Predict GO terms from Neighborhoods
CC	GO:0030133	transport vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030135	coated vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030136	clathrin-coated vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030139	endocytic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030141	secretory granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0030285	integral component of synaptic vesicle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0030301	cholesterol transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0030666	endocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0030674	protein-macromolecule adaptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031082	BLOC complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031083	BLOC-1 complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031201	SNARE complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031301	integral component of organelle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031341	regulation of cell killing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031343	positive regulation of cell killing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031647	regulation of protein stability	IEP	Predict GO terms from Neighborhoods
CC	GO:0031902	late endosome membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031985	Golgi cisterna	IEP	Predict GO terms from Neighborhoods
CC	GO:0032588	trans-Golgi network membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032940	secretion by cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0033344	cholesterol efflux	IEP	Predict GO terms from Neighborhoods
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Predict GO terms from Neighborhoods
CC	GO:0042582	azurophil granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0045055	regulated exocytosis	IEP	Predict GO terms from Neighborhoods
CC	GO:0045121	membrane raft	IEP	Predict GO terms from Neighborhoods
BP	GO:0045324	late endosome to vacuole transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0045335	phagocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0046903	secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0048193	Golgi vesicle transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0048278	vesicle docking	IEP	Predict GO terms from Neighborhoods
BP	GO:0048284	organelle fusion	IEP	Predict GO terms from Neighborhoods
CC	GO:0048471	perinuclear region of cytoplasm	IEP	Predict GO terms from Neighborhoods
BP	GO:0050821	protein stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051640	organelle localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0055037	recycling endosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0060090	molecular adaptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061025	membrane fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0070925	organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0072594	establishment of protein localization to organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0072665	protein localization to vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0072666	establishment of protein localization to vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0090161	Golgi ribbon formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090174	organelle membrane fusion	IEP	Predict GO terms from Neighborhoods
CC	GO:0098563	intrinsic component of synaptic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098852	lytic vacuole membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098857	membrane microdomain	IEP	Predict GO terms from Neighborhoods
BP	GO:0099003	vesicle-mediated transport in synapse	IEP	Predict GO terms from Neighborhoods
MF	GO:0099106	ion channel regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0099503	secretory vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0099643	signal release from synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predict GO terms from Neighborhoods
BP	GO:0140352	export from cell	IEP	Predict GO terms from Neighborhoods
BP	GO:1902683	regulation of receptor localization to synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:1902685	positive regulation of receptor localization to synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:1903076	regulation of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1904375	regulation of protein localization to cell periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:1905037	autophagosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1905475	regulation of protein localization to membrane	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005381	Znf-XS_domain	129	169
IPR005380	XS_domain	335	445
IPR005379	FDM1-5/IDN2_XH	714	844

External Links

No external refs found!

SOLTUB.AGRIA.G00000023208

Expression Profile

Co-expression Networks

Functional Annotation