SOLTUB.AGRIA.G00000023385

Description : SET-domain containing protein lysine methyltransferase family protein

Gene families : OG_02_0015532 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000023385
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_243

Type	GO Term	Name	Evidence	Source
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0000183	rDNA heterochromatin formation	IEA	AHRD
BP	GO:0000280	nuclear division	None	Extended
CC	GO:0000785	chromatin	None	Extended
CC	GO:0000792	heterochromatin	None	Extended
MF	GO:0000976	transcription cis-regulatory region binding	None	Extended
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0001666	response to hypoxia	None	Extended
BP	GO:0001835	blastocyst hatching	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005677	chromatin silencing complex	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006282	regulation of DNA repair	IEA	AHRD
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0007281	germ cell development	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008170	N-methyltransferase activity	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
MF	GO:0008276	protein methyltransferase activity	None	Extended
BP	GO:0008340	determination of adult lifespan	IEA	AHRD
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016278	lysine N-methyltransferase activity	None	Extended
MF	GO:0016279	protein-lysine N-methyltransferase activity	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
MF	GO:0018024	histone-lysine N-methyltransferase activity	None	Extended
BP	GO:0018027	peptidyl-lysine dimethylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030278	regulation of ossification	None	Extended
BP	GO:0030500	regulation of bone mineralization	IEA	AHRD
BP	GO:0031017	exocrine pancreas development	IEA	AHRD
BP	GO:0031047	gene silencing by RNA	None	Extended
BP	GO:0031048	small non-coding RNA-dependent heterochromatin formation	None	Extended
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031058	positive regulation of histone modification	None	Extended
BP	GO:0031060	regulation of histone methylation	None	Extended
BP	GO:0031062	positive regulation of histone methylation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033553	rDNA heterochromatin	IEA	AHRD
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0035188	hatching	None	Extended
BP	GO:0036123	histone H3-K9 dimethylation	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0036294	cellular response to decreased oxygen levels	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0040014	regulation of multicellular organism growth	IEA	AHRD
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
MF	GO:0042054	histone methyltransferase activity	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042752	regulation of circadian rhythm	None	Extended
BP	GO:0042754	negative regulation of circadian rhythm	IEA	AHRD
MF	GO:0042802	identical protein binding	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
MF	GO:0046974	histone methyltransferase activity (H3-K9 specific)	IEA	AHRD
MF	GO:0047485	protein N-terminus binding	IEA	AHRD
BP	GO:0048232	male gamete generation	IEA	AHRD
BP	GO:0048285	organelle fission	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048732	gland development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051567	histone H3-K9 methylation	None	Extended
BP	GO:0051570	regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051574	positive regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060042	retina morphogenesis in camera-type eye	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070167	regulation of biomineral tissue development	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071453	cellular response to oxygen levels	None	Extended
BP	GO:0071456	cellular response to hypoxia	IEA	AHRD
BP	GO:0071684	organism emergence from protective structure	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0110149	regulation of biomineralization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140013	meiotic nuclear division	IEA	AHRD
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:0140718	facultative heterochromatin formation	None	Extended
BP	GO:1900112	regulation of histone H3-K9 trimethylation	None	Extended
BP	GO:1900114	positive regulation of histone H3-K9 trimethylation	IEA	AHRD
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	IEA	AHRD
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000772	regulation of cellular senescence	IEA	AHRD
BP	GO:2001020	regulation of response to DNA damage stimulus	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IEP	Predict GO terms from Neighborhoods
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0000228	nuclear chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000710	meiotic mismatch repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0000712	resolution of meiotic recombination intermediates	IEP	Predict GO terms from Neighborhoods
CC	GO:0000793	condensed chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0000794	condensed nuclear chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002940	tRNA N2-guanine methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0004326	tetrahydrofolylpolyglutamate synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004521	endoribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005637	nuclear inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005731	nucleolus organizer region	IEP	Predict GO terms from Neighborhoods
BP	GO:0006298	mismatch repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006482	protein demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0007140	male meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0007143	female meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008214	protein dealkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008356	asymmetric cell division	IEP	Predict GO terms from Neighborhoods
MF	GO:0008841	dihydrofolate synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009561	megagametogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0009853	photorespiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0009934	regulation of meristem structural organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010196	nonphotochemical quenching	IEP	Predict GO terms from Neighborhoods
BP	GO:0010479	stele development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010501	RNA secondary structure unwinding	IEP	Predict GO terms from Neighborhoods
BP	GO:0010586	miRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010777	meiotic mismatch repair involved in reciprocal meiotic recombination	IEP	Predict GO terms from Neighborhoods
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016442	RISC complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0016577	histone demethylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019827	stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0030488	tRNA methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030874	nucleolar chromatin	IEP	Predict GO terms from Neighborhoods
MF	GO:0030983	mismatched DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031057	negative regulation of histone modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0031332	RNAi effector complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033169	histone H3-K9 demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035019	somatic stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0035065	regulation of histone acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035067	negative regulation of histone acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035194	post-transcriptional gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0035195	miRNA-mediated gene silencing	IEP	Predict GO terms from Neighborhoods
MF	GO:0035197	siRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0035198	miRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0043073	germ cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0043094	cellular metabolic compound salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048830	adventitious root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051026	chiasma assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0055046	microgametogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061866	obsolete negative regulation of histone H3-S10 phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0061980	regulatory RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0061982	meiosis I cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070076	histone lysine demethylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0070578	RISC-loading complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070988	demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090058	metaxylem development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090351	seedling development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	Predict GO terms from Neighborhoods
BP	GO:0098727	maintenance of cell number	IEP	Predict GO terms from Neighborhoods
MF	GO:0120227	acyl-CoA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901222	regulation of NIK/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:1901224	positive regulation of NIK/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:1901567	fatty acid derivative binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901983	regulation of protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901984	negative regulation of protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902183	regulation of shoot apical meristem development	IEP	Predict GO terms from Neighborhoods
CC	GO:1902555	endoribonuclease complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903341	regulation of meiotic DNA double-strand break formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903343	positive regulation of meiotic DNA double-strand break formation	IEP	Predict GO terms from Neighborhoods
CC	GO:1905348	endonuclease complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1990066	energy quenching	IEP	Predict GO terms from Neighborhoods
BP	GO:2000615	regulation of histone H3-K9 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000616	negative regulation of histone H3-K9 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000756	regulation of peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007728	Pre-SET_dom	549	696
IPR018848	WIYLD_domain	6	60
IPR001214	SET_dom	716	838

External Links

No external refs found!

SOLTUB.AGRIA.G00000023385

Expression Profile

Co-expression Networks

Functional Annotation