SOLTUB.AGRIA.G00000023433

Description : Cyclin family protein

Gene families : OG_02_0022876 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000023433
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_171

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEA	AHRD
BP	GO:0003002	regionalization	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007049	cell cycle	IEA	AHRD
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0007423	sensory organ development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009896	positive regulation of catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010506	regulation of autophagy	None	Extended
BP	GO:0010508	positive regulation of autophagy	IEA	AHRD
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016073	snRNA metabolic process	None	Extended
BP	GO:0016180	snRNA processing	None	Extended
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEA	AHRD
BP	GO:0016567	protein ubiquitination	IEA	AHRD
CC	GO:0016592	mediator complex	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019207	kinase regulator activity	None	Extended
BP	GO:0019216	regulation of lipid metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0019887	protein kinase regulator activity	None	Extended
BP	GO:0022416	chaeta development	IEA	AHRD
MF	GO:0030234	enzyme regulator activity	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031331	positive regulation of cellular catabolic process	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032104	regulation of response to extracellular stimulus	None	Extended
BP	GO:0032107	regulation of response to nutrient levels	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034472	snRNA 3'-end processing	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0035282	segmentation	None	Extended
BP	GO:0035285	appendage segmentation	None	Extended
BP	GO:0036011	imaginal disc-derived leg segmentation	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045498	sex comb development	IEA	AHRD
BP	GO:0045833	negative regulation of lipid metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051301	cell division	IEA	AHRD
BP	GO:0060176	regulation of aggregation involved in sorocarp development	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	AHRD
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090207	regulation of triglyceride metabolic process	None	Extended
BP	GO:0090209	negative regulation of triglyceride metabolic process	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000045	autophagosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0000329	fungal-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0000421	autophagosome membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0001505	regulation of neurotransmitter levels	IEP	Predict GO terms from Neighborhoods
CC	GO:0001726	ruffle	IEP	Predict GO terms from Neighborhoods
MF	GO:0003925	G protein activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004462	lactoylglutathione lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004493	methylmalonyl-CoA epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004529	exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004536	deoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006089	lactate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006909	phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006995	cellular response to nitrogen starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007032	endosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008409	5'-3' exonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008429	phosphatidylethanolamine binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009267	cellular response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009438	methylglyoxal metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009705	plant-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009856	pollination	IEP	Predict GO terms from Neighborhoods
CC	GO:0010009	cytoplasmic side of endosome membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0014910	regulation of smooth muscle cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0014911	positive regulation of smooth muscle cell migration	IEP	Predict GO terms from Neighborhoods
CC	GO:0015629	actin cytoskeleton	IEP	Predict GO terms from Neighborhoods
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016854	racemase and epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
BP	GO:0017157	regulation of exocytosis	IEP	Predict GO terms from Neighborhoods
CC	GO:0018995	host cellular component	IEP	Predict GO terms from Neighborhoods
MF	GO:0019003	GDP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019079	viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	IEP	Predict GO terms from Neighborhoods
CC	GO:0030662	coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030665	clathrin-coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030666	endocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030667	secretory granule membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030669	clathrin-coated endocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030670	phagocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0031623	receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031669	cellular response to nutrient levels	IEP	Predict GO terms from Neighborhoods
CC	GO:0031902	late endosome membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0032009	early phagosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0032456	endocytic recycling	IEP	Predict GO terms from Neighborhoods
CC	GO:0032585	multivesicular body membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0032586	protein storage vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0033643	host cell part	IEP	Predict GO terms from Neighborhoods
MF	GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0035064	methylated histone binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0035312	5'-3' exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0036302	atrioventricular canal development	IEP	Predict GO terms from Neighborhoods
BP	GO:0036465	synaptic vesicle recycling	IEP	Predict GO terms from Neighborhoods
BP	GO:0039694	viral RNA genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0042182	ketone catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042470	melanosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0042589	zymogen granule membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042594	response to starvation	IEP	Predict GO terms from Neighborhoods
CC	GO:0043195	terminal bouton	IEP	Predict GO terms from Neighborhoods
BP	GO:0044088	regulation of vacuole organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045022	early endosome to late endosome transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0045056	transcytosis	IEP	Predict GO terms from Neighborhoods
CC	GO:0045121	membrane raft	IEP	Predict GO terms from Neighborhoods
BP	GO:0045324	late endosome to vacuole transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0045921	positive regulation of exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0046185	aldehyde catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046491	L-methylmalonyl-CoA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046677	response to antibiotic	IEP	Predict GO terms from Neighborhoods
BP	GO:0046928	regulation of neurotransmitter secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0048167	regulation of synaptic plasticity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048168	regulation of neuronal synaptic plasticity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048169	regulation of long-term neuronal synaptic plasticity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048227	plasma membrane to endosome transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0048660	regulation of smooth muscle cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048661	positive regulation of smooth muscle cell proliferation	IEP	Predict GO terms from Neighborhoods
CC	GO:0048770	pigment granule	IEP	Predict GO terms from Neighborhoods
MF	GO:0051021	GDP-dissociation inhibitor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051036	regulation of endosome size	IEP	Predict GO terms from Neighborhoods
BP	GO:0051489	regulation of filopodium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051588	regulation of neurotransmitter transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051596	methylglyoxal catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0055037	recycling endosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0060491	regulation of cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0061727	methylglyoxal catabolic process to lactate	IEP	Predict GO terms from Neighborhoods
BP	GO:0062197	cellular response to chemical stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071470	cellular response to osmotic stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0097242	amyloid-beta clearance	IEP	Predict GO terms from Neighborhoods
BP	GO:0097396	response to interleukin-17	IEP	Predict GO terms from Neighborhoods
BP	GO:0097398	cellular response to interleukin-17	IEP	Predict GO terms from Neighborhoods
CC	GO:0097443	sorting endosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0097494	regulation of vesicle size	IEP	Predict GO terms from Neighborhoods
CC	GO:0098559	cytoplasmic side of early endosome membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098563	intrinsic component of synaptic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098842	postsynaptic early endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0098845	postsynaptic endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0098857	membrane microdomain	IEP	Predict GO terms from Neighborhoods
BP	GO:0098927	vesicle-mediated transport between endosomal compartments	IEP	Predict GO terms from Neighborhoods
CC	GO:0098993	anchored component of synaptic vesicle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0110012	protein localization to P-body	IEP	Predict GO terms from Neighborhoods
BP	GO:0110154	RNA decapping	IEP	Predict GO terms from Neighborhoods
BP	GO:0110156	methylguanosine-cap decapping	IEP	Predict GO terms from Neighborhoods
BP	GO:0120032	regulation of plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0140034	methylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0140220	pathogen-containing vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0150093	amyloid-beta clearance by transcytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:1903305	regulation of regulated secretory pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1905037	autophagosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1905072	cardiac jelly development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000286	receptor internalization involved in canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000300	regulation of synaptic vesicle exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000785	regulation of autophagosome assembly	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006671	Cyclin_N	44	142
IPR036915	Cyclin-like_sf	4	144
IPR036915	Cyclin-like_sf	146	234

External Links

No external refs found!

SOLTUB.AGRIA.G00000023433

Expression Profile

Co-expression Networks

Functional Annotation