SOLTUB.AGRIA.G00000023443

Description : DNA-directed RNA polymerases I, II, and III subunit RPABC5

Gene families : OG_02_0020202 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000023443
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_126

Type	GO Term	Name	Evidence	Source
CC	GO:0000418	RNA polymerase IV complex	IEA	AHRD
CC	GO:0000419	RNA polymerase V complex	IEA	AHRD
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0001054	RNA polymerase I activity	IEA	AHRD
MF	GO:0001055	RNA polymerase II activity	IEA	AHRD
MF	GO:0001056	RNA polymerase III activity	IEA	AHRD
BP	GO:0001172	RNA-templated transcription	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	None	Extended
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005665	RNA polymerase II, core complex	IEA	AHRD
CC	GO:0005666	RNA polymerase III complex	IEA	AHRD
CC	GO:0005736	RNA polymerase I complex	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006356	regulation of transcription by RNA polymerase I	IEA	AHRD
BP	GO:0006366	transcription by RNA polymerase II	IEA	AHRD
BP	GO:0006383	transcription by RNA polymerase III	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009304	tRNA transcription	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	AHRD
BP	GO:0042797	tRNA transcription by RNA polymerase III	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
BP	GO:0098781	ncRNA transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0000243	commitment complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0000387	spliceosomal snRNP assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0000506	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Predict GO terms from Neighborhoods
MF	GO:0004582	dolichyl-phosphate beta-D-mannosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005682	U5 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005683	U7 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005684	U2-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005685	U1 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005686	U2 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005687	U4 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005688	U6 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005689	U12-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005697	telomerase holoenzyme complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005746	mitochondrial respirasome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006493	protein O-linked glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006497	protein lipidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006505	GPI anchor metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006664	glycolipid metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009247	glycolipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016093	polyprenol metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0017070	U6 snRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019348	dolichol metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019904	protein domain specific binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0030165	PDZ domain binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031501	mannosyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0033185	dolichol-phosphate-mannose synthase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034709	methylosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0034715	pICln-Sm protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034719	SMN-Sm protein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0035268	protein mannosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035269	protein O-linked mannosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035372	protein localization to microtubule	IEP	Predict GO terms from Neighborhoods
CC	GO:0035770	ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
MF	GO:0042731	PH domain binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043186	P granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0043197	dendritic spine	IEP	Predict GO terms from Neighborhoods
CC	GO:0043198	dendritic shaft	IEP	Predict GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0044309	neuron spine	IEP	Predict GO terms from Neighborhoods
BP	GO:0044380	protein localization to cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0045292	mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0050807	regulation of synapse organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0070034	telomerase RNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0070469	respirasome	IEP	Predict GO terms from Neighborhoods
MF	GO:0070990	snRNP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0071004	U2-type prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071005	U2-type precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071010	prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071011	precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0071208	histone pre-mRNA DCP binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0071209	U7 snRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0072698	protein localization to microtubule cytoskeleton	IEP	Predict GO terms from Neighborhoods
MF	GO:0097110	scaffold protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0097502	mannosylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098794	postsynapse	IEP	Predict GO terms from Neighborhoods
CC	GO:0099080	supramolecular complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0099175	regulation of postsynapse organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0110154	RNA decapping	IEP	Predict GO terms from Neighborhoods
BP	GO:0110156	methylguanosine-cap decapping	IEP	Predict GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0120115	Lsm2-8 complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902455	negative regulation of stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:1902897	regulation of postsynaptic density protein 95 clustering	IEP	Predict GO terms from Neighborhoods
BP	GO:1903509	liposaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905323	telomerase holoenzyme complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1905475	regulation of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1905874	regulation of postsynaptic density organization	IEP	Predict GO terms from Neighborhoods
MF	GO:1990446	U1 snRNP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:1990726	Lsm1-7-Pat1 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000036	regulation of stem cell population maintenance	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR023580	RNA_pol_su_RPB10	1	63
IPR000268	RPABC5/Rpb10	1	59

External Links

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SOLTUB.AGRIA.G00000023443

Expression Profile

Co-expression Networks

Functional Annotation