SOLTUB.AGRIA.G00000002488


Description : 1-deoxy-D-xylulose 5-phosphate synthase 1


Gene families : OG_02_0018150 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002488
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_49


Type GO Term Name Evidence Source
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEA AHRD
BP GO:0009228 thiamine biosynthetic process IEA AHRD
CC GO:0009570 chloroplast stroma IEA AHRD
BP GO:0015995 chlorophyll biosynthetic process IEA AHRD
BP GO:0016114 terpenoid biosynthetic process IEA AHRD
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
BP GO:0052865 1-deoxy-D-xylulose 5-phosphate biosynthetic process IEA AHRD
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predict GO terms from Neighborhoods
MF GO:0004373 glycogen (starch) synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0005997 xylulose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006091 generation of precursor metabolites and energy IEP Predict GO terms from Neighborhoods
BP GO:0006775 fat-soluble vitamin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006782 protoporphyrinogen IX biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006848 pyruvate transport IEP Predict GO terms from Neighborhoods
BP GO:0006849 plasma membrane pyruvate transport IEP Predict GO terms from Neighborhoods
BP GO:0006895 Golgi to endosome transport IEP Predict GO terms from Neighborhoods
BP GO:0006909 phagocytosis IEP Predict GO terms from Neighborhoods
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0007264 small GTPase mediated signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0007265 Ras protein signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0007623 circadian rhythm IEP Predict GO terms from Neighborhoods
BP GO:0008543 fibroblast growth factor receptor signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0008874 gluconate 5-dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0008875 gluconate dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0008883 glutamyl-tRNA reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0008909 isochorismate synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0009011 starch synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0009237 siderophore metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009266 response to temperature stimulus IEP Predict GO terms from Neighborhoods
CC GO:0009501 amyloplast IEP Predict GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Predict GO terms from Neighborhoods
CC GO:0009522 photosystem I IEP Predict GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Predict GO terms from Neighborhoods
CC GO:0009528 plastid inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0009535 chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0009606 tropism IEP Predict GO terms from Neighborhoods
BP GO:0009637 response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0009638 phototropism IEP Predict GO terms from Neighborhoods
BP GO:0009645 response to low light intensity stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009692 ethylene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009693 ethylene biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009697 salicylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009704 de-etiolation IEP Predict GO terms from Neighborhoods
CC GO:0009706 chloroplast inner membrane IEP Predict GO terms from Neighborhoods
BP GO:0009765 photosynthesis, light harvesting IEP Predict GO terms from Neighborhoods
BP GO:0009768 photosynthesis, light harvesting in photosystem I IEP Predict GO terms from Neighborhoods
CC GO:0009782 photosystem I antenna complex IEP Predict GO terms from Neighborhoods
BP GO:0009785 blue light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009822 alkaloid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010017 red or far-red light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010019 chloroplast-nucleus signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010021 amylopectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010099 regulation of photomorphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010100 negative regulation of photomorphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010109 regulation of photosynthesis IEP Predict GO terms from Neighborhoods
BP GO:0010114 response to red light IEP Predict GO terms from Neighborhoods
BP GO:0010117 photoprotection IEP Predict GO terms from Neighborhoods
BP GO:0010161 red light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010189 vitamin E biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010218 response to far red light IEP Predict GO terms from Neighborhoods
BP GO:0010244 response to low fluence blue light stimulus by blue low-fluence system IEP Predict GO terms from Neighborhoods
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predict GO terms from Neighborhoods
CC GO:0010287 plastoglobule IEP Predict GO terms from Neighborhoods
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010600 regulation of auxin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010726 positive regulation of hydrogen peroxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010728 regulation of hydrogen peroxide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010729 positive regulation of hydrogen peroxide biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0015665 alcohol transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015887 pantothenate transmembrane transport IEP Predict GO terms from Neighborhoods
CC GO:0016020 membrane IEP Predict GO terms from Neighborhoods
MF GO:0016168 chlorophyll binding IEP Predict GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Predict GO terms from Neighborhoods
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predict GO terms from Neighborhoods
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predict GO terms from Neighborhoods
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predict GO terms from Neighborhoods
MF GO:0016866 intramolecular transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predict GO terms from Neighborhoods
BP GO:0018298 obsolete protein-chromophore linkage IEP Predict GO terms from Neighborhoods
MF GO:0019003 GDP binding IEP Predict GO terms from Neighborhoods
MF GO:0019171 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity IEP Predict GO terms from Neighborhoods
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019252 starch biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019290 siderophore biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019321 pentose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019520 aldonic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019523 L-idonate metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0019866 organelle inner membrane IEP Predict GO terms from Neighborhoods
MF GO:0019904 protein domain specific binding IEP Predict GO terms from Neighborhoods
CC GO:0031090 organelle membrane IEP Predict GO terms from Neighborhoods
CC GO:0031164 contractile vacuolar membrane IEP Predict GO terms from Neighborhoods
MF GO:0031409 pigment binding IEP Predict GO terms from Neighborhoods
BP GO:0031539 positive regulation of anthocyanin metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0031901 early endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0031969 chloroplast membrane IEP Predict GO terms from Neighborhoods
MF GO:0032451 demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0032456 endocytic recycling IEP Predict GO terms from Neighborhoods
BP GO:0032482 Rab protein signal transduction IEP Predict GO terms from Neighborhoods
CC GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane IEP Predict GO terms from Neighborhoods
MF GO:0033201 alpha-1,4-glucan synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0033321 homomethionine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033385 geranylgeranyl diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033506 glucosinolate biosynthetic process from homomethionine IEP Predict GO terms from Neighborhoods
BP GO:0033519 phytyl diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033521 phytyl diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
BP GO:0035461 vitamin transmembrane transport IEP Predict GO terms from Neighborhoods
CC GO:0042170 plastid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042360 vitamin E metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042371 vitamin K biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042372 phylloquinone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042373 vitamin K metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042374 phylloquinone metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0042470 melanosome IEP Predict GO terms from Neighborhoods
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0043449 cellular alkene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043450 alkene biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0043879 glycolate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0045176 apical protein localization IEP Predict GO terms from Neighborhoods
MF GO:0045550 geranylgeranyl reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0045551 cinnamyl-alcohol dehydrogenase activity IEP Predict GO terms from Neighborhoods
BP GO:0045921 positive regulation of exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0046176 aldonic acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046183 L-idonate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046501 protoporphyrinogen IX metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Predict GO terms from Neighborhoods
BP GO:0048440 carpel development IEP Predict GO terms from Neighborhoods
BP GO:0048576 positive regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048581 negative regulation of post-embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0048582 positive regulation of post-embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
CC GO:0048770 pigment granule IEP Predict GO terms from Neighborhoods
MF GO:0050268 coniferyl-alcohol dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0050486 intramolecular transferase activity, transferring hydroxy groups IEP Predict GO terms from Neighborhoods
MF GO:0050660 flavin adenine dinucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0050833 pyruvate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0051180 vitamin transport IEP Predict GO terms from Neighborhoods
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predict GO terms from Neighborhoods
CC GO:0055035 plastid thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0055037 recycling endosome IEP Predict GO terms from Neighborhoods
BP GO:0060866 leaf abscission IEP Predict GO terms from Neighborhoods
BP GO:0070370 cellular heat acclimation IEP Predict GO terms from Neighborhoods
BP GO:0071478 cellular response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0071482 cellular response to light stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071483 cellular response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0071489 cellular response to red or far red light IEP Predict GO terms from Neighborhoods
BP GO:0071491 cellular response to red light IEP Predict GO terms from Neighborhoods
MF GO:0071949 FAD binding IEP Predict GO terms from Neighborhoods
BP GO:0072337 modified amino acid transport IEP Predict GO terms from Neighborhoods
BP GO:0080006 internode patterning IEP Predict GO terms from Neighborhoods
BP GO:0090227 regulation of red or far-red light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0090229 negative regulation of red or far-red light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0090351 seedling development IEP Predict GO terms from Neighborhoods
BP GO:0090382 phagosome maturation IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
CC GO:0098563 intrinsic component of synaptic vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0098717 pantothenate import across plasma membrane IEP Predict GO terms from Neighborhoods
CC GO:0098993 anchored component of synaptic vesicle membrane IEP Predict GO terms from Neighborhoods
MF GO:0102067 geranylgeranyl diphosphate reductase activity IEP Predict GO terms from Neighborhoods
BP GO:1900673 olefin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1900674 olefin biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:1901475 pyruvate transmembrane transport IEP Predict GO terms from Neighborhoods
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:1901661 quinone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901663 quinone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902446 regulation of shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:1902448 positive regulation of shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:1903426 regulation of reactive oxygen species biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903428 positive regulation of reactive oxygen species biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1905157 positive regulation of photosynthesis IEP Predict GO terms from Neighborhoods
BP GO:2000026 regulation of multicellular organismal development IEP Predict GO terms from Neighborhoods
BP GO:2000030 regulation of response to red or far red light IEP Predict GO terms from Neighborhoods
BP GO:2000243 positive regulation of reproductive process IEP Predict GO terms from Neighborhoods
BP GO:2000379 positive regulation of reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000896 amylopectin metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR029061 THDP-binding 73 460
IPR029061 THDP-binding 396 586
IPR005477 Dxylulose-5-P_synthase 78 708
IPR005477 Dxylulose-5-P_synthase 76 361
IPR005475 Transketolase-like_Pyr-bd 398 559
IPR009014 Transketo_C/PFOR_II 572 708
IPR033248 Transketolase_C 577 700
No external refs found!