SOLTUB.AGRIA.G00000024357

Description : Vernalization insensitive 3

Gene families : OG_02_0009771 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000024357
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_82

Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005677	chromatin silencing complex	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007623	circadian rhythm	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010048	vernalization response	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031058	positive regulation of histone modification	None	Extended
BP	GO:0031060	regulation of histone methylation	None	Extended
BP	GO:0031062	positive regulation of histone methylation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
CC	GO:0031519	PcG protein complex	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032922	circadian regulation of gene expression	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
MF	GO:0035064	methylated histone binding	IEA	AHRD
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
MF	GO:0042393	histone binding	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEA	AHRD
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051569	regulation of histone H3-K4 methylation	None	Extended
BP	GO:0051570	regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051571	positive regulation of histone H3-K4 methylation	IEA	AHRD
BP	GO:0051574	positive regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061085	regulation of histone H3-K27 methylation	None	Extended
BP	GO:0061087	positive regulation of histone H3-K27 methylation	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070417	cellular response to cold	IEA	AHRD
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140030	modification-dependent protein binding	None	Extended
MF	GO:0140034	methylation-dependent protein binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1900109	regulation of histone H3-K9 dimethylation	None	Extended
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEA	AHRD
BP	GO:2000028	regulation of photoperiodism, flowering	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000329	fungal-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005244	voltage-gated ion channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005253	anion channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005254	chloride channel activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
CC	GO:0005745	m-AAA complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005757	mitochondrial permeability transition pore complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005768	endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005776	autophagosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005783	endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006029	proteoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006497	protein lipidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006810	transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006821	chloride transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006851	mitochondrial calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007006	mitochondrial membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007007	inner mitochondrial membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007259	receptor signaling pathway via JAK-STAT	IEP	Predict GO terms from Neighborhoods
BP	GO:0007272	ensheathment of neurons	IEP	Predict GO terms from Neighborhoods
BP	GO:0007391	dorsal closure	IEP	Predict GO terms from Neighborhoods
BP	GO:0007409	axonogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0008053	mitochondrial fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0008088	axo-dendritic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008089	anterograde axonal transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008146	sulfotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008308	voltage-gated anion channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008366	axon ensheathment	IEP	Predict GO terms from Neighborhoods
MF	GO:0008476	protein-tyrosine sulfotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009964	negative regulation of flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009968	negative regulation of signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0010256	endomembrane system organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010289	homogalacturonan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010344	seed oilbody biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010364	regulation of ethylene biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010366	negative regulation of ethylene biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010394	homogalacturonan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010413	glucuronoxylan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010648	negative regulation of cell communication	IEP	Predict GO terms from Neighborhoods
BP	GO:0014066	regulation of phosphatidylinositol 3-kinase signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0014067	negative regulation of phosphatidylinositol 3-kinase signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0015015	heparan sulfate proteoglycan biosynthetic process, enzymatic modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015693	magnesium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015918	sterol transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016197	endosomal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016331	morphogenesis of embryonic epithelium	IEP	Predict GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016417	S-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016540	protein autoprocessing	IEP	Predict GO terms from Neighborhoods
MF	GO:0016621	cinnamoyl-CoA reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0017095	heparan sulfate 6-O-sulfotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018198	peptidyl-cysteine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018230	peptidyl-L-cysteine S-palmitoylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018231	peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine	IEP	Predict GO terms from Neighborhoods
BP	GO:0018345	protein palmitoylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019706	protein-cysteine S-palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019707	protein-cysteine S-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022406	membrane docking	IEP	Predict GO terms from Neighborhoods
MF	GO:0022832	voltage-gated channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0023057	negative regulation of signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0030198	extracellular matrix organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030201	heparan sulfate proteoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030301	cholesterol transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031335	regulation of sulfur amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031336	negative regulation of sulfur amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031410	cytoplasmic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031982	vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0032154	cleavage furrow	IEP	Predict GO terms from Neighborhoods
BP	GO:0032365	intracellular lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032366	intracellular sterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032367	intracellular cholesterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032509	endosome transport via multivesicular body sorting pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033619	membrane protein proteolysis	IEP	Predict GO terms from Neighborhoods
MF	GO:0033729	anthocyanidin reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034483	heparan sulfate sulfotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034499	late endosome to Golgi transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0034702	ion channel complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034707	chloride channel complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034982	mitochondrial protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035112	genitalia morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0035126	post-embryonic genitalia morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0035794	positive regulation of mitochondrial membrane permeability	IEP	Predict GO terms from Neighborhoods
BP	GO:0036148	phosphatidylglycerol acyl-chain remodeling	IEP	Predict GO terms from Neighborhoods
BP	GO:0036444	calcium import into the mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042407	cristae formation	IEP	Predict GO terms from Neighborhoods
CC	GO:0042470	melanosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0042552	myelination	IEP	Predict GO terms from Neighborhoods
BP	GO:0042754	negative regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0042762	regulation of sulfur metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043062	extracellular structure organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0043328	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0043524	negative regulation of neuron apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043547	positive regulation of GTPase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044088	regulation of vacuole organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0044090	positive regulation of vacuole organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0044232	organelle membrane contact site	IEP	Predict GO terms from Neighborhoods
CC	GO:0044233	mitochondria-associated endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0046471	phosphatidylglycerol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046580	negative regulation of Ras protein signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0046902	regulation of mitochondrial membrane permeability	IEP	Predict GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0046930	pore complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048358	mucilage pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048363	mucilage pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048563	post-embryonic animal organ morphogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0048770	pigment granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0048805	imaginal disc-derived genitalia morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051058	negative regulation of small GTPase mediated signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0051175	negative regulation of sulfur metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051179	localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051234	establishment of localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051560	mitochondrial calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0052325	cell wall pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0055070	copper ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060004	reflex	IEP	Predict GO terms from Neighborhoods
BP	GO:0060013	righting reflex	IEP	Predict GO terms from Neighborhoods
MF	GO:0061578	Lys63-specific deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061951	establishment of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0070122	obsolete isopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070536	protein K63-linked deubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0071108	protein K48-linked deubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0071985	multivesicular body sorting pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0080110	sporopollenin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090559	regulation of membrane permeability	IEP	Predict GO terms from Neighborhoods
CC	GO:0097002	mitochondrial inner boundary membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0097696	receptor signaling pathway via STAT	IEP	Predict GO terms from Neighborhoods
CC	GO:0097708	intracellular vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0098588	bounding membrane of organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0098655	cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098930	axonal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0110037	regulation of nematode male tail tip morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0110039	positive regulation of nematode male tail tip morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predict GO terms from Neighborhoods
BP	GO:1900908	regulation of olefin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900909	negative regulation of olefin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900911	regulation of olefin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900912	negative regulation of olefin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:1902686	mitochondrial outer membrane permeabilization involved in programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:1903830	magnesium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905710	positive regulation of membrane permeability	IEP	Predict GO terms from Neighborhoods
BP	GO:2000035	regulation of stem cell division	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR032881	Oberon_PHD	179	298

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SOLTUB.AGRIA.G00000024357

Expression Profile

Co-expression Networks

Functional Annotation