SOLTUB.AGRIA.G00000024811

Description : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein

Gene families : OG_02_0000815 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000024811
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_180

Type	GO Term	Name	Evidence	Source
CC	GO:0000109	nucleotide-excision repair complex	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	IEA	AHRD
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	IEA	AHRD
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	IEA	AHRD
BP	GO:0051704	obsolete multi-organism process	IEA	AHRD
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000138	Golgi trans cisterna	IEP	Predict GO terms from Neighborhoods
CC	GO:0000145	exocyst	IEP	Predict GO terms from Neighborhoods
MF	GO:0003959	NADPH dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004650	polygalacturonase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004737	pyruvate decarboxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004838	L-tyrosine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005354	galactose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005365	myo-inositol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005464	UDP-xylose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005509	calcium ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
CC	GO:0005754	mitochondrial proton-transporting ATP synthase, catalytic core	IEP	Predict GO terms from Neighborhoods
BP	GO:0006113	fermentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006116	NADH oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006734	NADH metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006754	ATP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006885	regulation of pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0006933	negative regulation of cell adhesion involved in substrate-bound cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0007162	negative regulation of cell adhesion	IEP	Predict GO terms from Neighborhoods
MF	GO:0008417	fucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008643	carbohydrate transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008793	aromatic-amino-acid:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009229	thiamine diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009969	xyloglucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010042	response to manganese ion	IEP	Predict GO terms from Neighborhoods
MF	GO:0010326	methionine-oxo-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010594	regulation of endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010595	positive regulation of endothelial cell migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0015078	proton transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015146	pentose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015148	D-xylose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015166	polyol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015168	glycerol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015252	proton channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015575	mannitol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015576	sorbitol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015591	D-ribose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015750	pentose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015790	UDP-xylose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015798	myo-inositol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0016759	cellulose synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019321	pentose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019322	pentose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019566	arabinose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019567	arabinose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019655	glycolytic fermentation to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0019660	glycolytic fermentation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019863	IgE binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030228	lipoprotein particle receptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031304	intrinsic component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031314	extrinsic component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
CC	GO:0031985	Golgi cisterna	IEP	Predict GO terms from Neighborhoods
MF	GO:0032029	myosin tail binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032036	myosin heavy chain binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0033356	UDP-L-arabinose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0038024	cargo receptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0042131	thiamine phosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0042287	MHC protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0042288	MHC class I protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042357	thiamine diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0042645	mitochondrial nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042776	proton motive force-driven mitochondrial ATP synthesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0043532	angiostatin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043535	regulation of blood vessel endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0043536	positive regulation of blood vessel endothelial cell migration	IEP	Predict GO terms from Neighborhoods
CC	GO:0043667	pollen wall	IEP	Predict GO terms from Neighborhoods
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predict GO terms from Neighborhoods
CC	GO:0045267	proton-transporting ATP synthase, catalytic core	IEP	Predict GO terms from Neighborhoods
BP	GO:0045472	response to ether	IEP	Predict GO terms from Neighborhoods
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Predict GO terms from Neighborhoods
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Predict GO terms from Neighborhoods
MF	GO:0047312	L-phenylalanine:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047635	alanine-oxo-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047911	galacturan 1,4-alpha-galacturonidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050048	L-leucine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050362	L-tryptophan:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050525	cutinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050997	quaternary ammonium group binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0052582	(+)-menthofuran synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052691	UDP-arabinopyranose mutase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052731	phosphocholine phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052732	phosphoethanolamine phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055067	monovalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070085	glycosylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0070529	L-tryptophan aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070546	L-phenylalanine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070547	L-tyrosine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070548	L-glutamine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070995	NADPH oxidation	IEP	Predict GO terms from Neighborhoods
MF	GO:0080097	L-tryptophan:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080098	L-tyrosine:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080099	L-methionine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080100	L-glutamine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080115	myosin XI tail binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0080130	L-phenylalanine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0090406	pollen tube	IEP	Predict GO terms from Neighborhoods
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0097730	non-motile cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0098760	response to interleukin-7	IEP	Predict GO terms from Neighborhoods
BP	GO:0098761	cellular response to interleukin-7	IEP	Predict GO terms from Neighborhoods
MF	GO:0102627	parthenolide 3beta-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102628	costunolide 3beta-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102876	psoralen synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102995	angelicin synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904643	response to curcumin	IEP	Predict GO terms from Neighborhoods
BP	GO:1905242	response to 3,3',5-triiodo-L-thyronine	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR027417	P-loop_NTPase	24	242
IPR018957	Znf_C3HC4_RING-type	410	449
IPR000330	SNF2_N	82	387

External Links

No external refs found!

SOLTUB.AGRIA.G00000024811

Expression Profile

Co-expression Networks

Functional Annotation