SOLTUB.AGRIA.G00000024865


Description : Pentatricopeptide repeat superfamily protein


Gene families : OG_02_0015722 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000024865
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_124


Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0004519 endonuclease activity IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
CC GO:0009507 chloroplast IEA AHRD
BP GO:0010214 seed coat development IEA AHRD
BP GO:0016125 sterol metabolic process IEA AHRD
BP GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway IEA AHRD
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEA AHRD
BP GO:0031425 chloroplast RNA processing IEA AHRD
MF GO:0034046 poly(G) binding IEA AHRD
BP GO:0048364 root development IEA AHRD
BP GO:0050790 regulation of catalytic activity IEA AHRD
BP GO:0080156 mitochondrial mRNA modification IEA AHRD
BP GO:0140547 acquisition of seed longevity IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
MF GO:0000993 RNA polymerase II complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
BP GO:0001817 regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0001819 positive regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0002164 larval development IEP Predict GO terms from Neighborhoods
BP GO:0002165 instar larval or pupal development IEP Predict GO terms from Neighborhoods
BP GO:0002168 instar larval development IEP Predict GO terms from Neighborhoods
MF GO:0003678 DNA helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Predict GO terms from Neighborhoods
CC GO:0005652 nuclear lamina IEP Predict GO terms from Neighborhoods
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006446 regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006997 nucleus organization IEP Predict GO terms from Neighborhoods
BP GO:0007059 chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0007292 female gamete generation IEP Predict GO terms from Neighborhoods
MF GO:0008143 poly(A) binding IEP Predict GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Predict GO terms from Neighborhoods
MF GO:0008190 eukaryotic initiation factor 4E binding IEP Predict GO terms from Neighborhoods
MF GO:0008327 methyl-CpG binding IEP Predict GO terms from Neighborhoods
CC GO:0009527 plastid outer membrane IEP Predict GO terms from Neighborhoods
BP GO:0009968 negative regulation of signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0010305 leaf vascular tissue pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010466 negative regulation of peptidase activity IEP Predict GO terms from Neighborhoods
CC GO:0010494 cytoplasmic stress granule IEP Predict GO terms from Neighborhoods
BP GO:0010501 RNA secondary structure unwinding IEP Predict GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010648 negative regulation of cell communication IEP Predict GO terms from Neighborhoods
BP GO:0010950 positive regulation of endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0010951 negative regulation of endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0010952 positive regulation of peptidase activity IEP Predict GO terms from Neighborhoods
CC GO:0015935 small ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0016363 nuclear matrix IEP Predict GO terms from Neighborhoods
CC GO:0016442 RISC complex IEP Predict GO terms from Neighborhoods
BP GO:0016553 base conversion or substitution editing IEP Predict GO terms from Neighborhoods
BP GO:0016554 cytidine to uridine editing IEP Predict GO terms from Neighborhoods
CC GO:0016591 RNA polymerase II, holoenzyme IEP Predict GO terms from Neighborhoods
MF GO:0019207 kinase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0019209 kinase activator activity IEP Predict GO terms from Neighborhoods
MF GO:0019887 protein kinase regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0022627 cytosolic small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0023057 negative regulation of signaling IEP Predict GO terms from Neighborhoods
BP GO:0030177 positive regulation of Wnt signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0030295 protein kinase activator activity IEP Predict GO terms from Neighborhoods
CC GO:0030880 RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0031053 primary miRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0031123 RNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031124 mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
CC GO:0031252 cell leading edge IEP Predict GO terms from Neighborhoods
CC GO:0031332 RNAi effector complex IEP Predict GO terms from Neighborhoods
BP GO:0031333 negative regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0031334 positive regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
BP GO:0031398 positive regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0031426 polycistronic mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0031952 regulation of protein autophosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0031954 positive regulation of protein autophosphorylation IEP Predict GO terms from Neighborhoods
CC GO:0031967 organelle envelope IEP Predict GO terms from Neighborhoods
CC GO:0031975 envelope IEP Predict GO terms from Neighborhoods
BP GO:0032056 positive regulation of translation in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0032479 regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032481 positive regulation of type I interferon production IEP Predict GO terms from Neighborhoods
BP GO:0032647 regulation of interferon-alpha production IEP Predict GO terms from Neighborhoods
BP GO:0032648 regulation of interferon-beta production IEP Predict GO terms from Neighborhoods
BP GO:0032727 positive regulation of interferon-alpha production IEP Predict GO terms from Neighborhoods
BP GO:0032728 positive regulation of interferon-beta production IEP Predict GO terms from Neighborhoods
MF GO:0033592 RNA strand annealing activity IEP Predict GO terms from Neighborhoods
BP GO:0033674 positive regulation of kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0034063 stress granule assembly IEP Predict GO terms from Neighborhoods
BP GO:0034121 regulation of toll-like receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0034123 positive regulation of toll-like receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0034155 regulation of toll-like receptor 7 signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0034157 positive regulation of toll-like receptor 7 signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0034159 regulation of toll-like receptor 8 signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0034161 positive regulation of toll-like receptor 8 signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0035196 miRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0035613 RNA stem-loop binding IEP Predict GO terms from Neighborhoods
BP GO:0036490 regulation of translation in response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:0036493 positive regulation of translation in response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:0042255 ribosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0042256 mature ribosome assembly IEP Predict GO terms from Neighborhoods
MF GO:0043015 gamma-tubulin binding IEP Predict GO terms from Neighborhoods
MF GO:0043024 ribosomal small subunit binding IEP Predict GO terms from Neighborhoods
BP GO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
CC GO:0043186 P granule IEP Predict GO terms from Neighborhoods
MF GO:0043273 CTPase activity IEP Predict GO terms from Neighborhoods
BP GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
MF GO:0043539 protein serine/threonine kinase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0043555 regulation of translation in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0043578 nuclear matrix organization IEP Predict GO terms from Neighborhoods
BP GO:0045069 regulation of viral genome replication IEP Predict GO terms from Neighborhoods
BP GO:0045070 positive regulation of viral genome replication IEP Predict GO terms from Neighborhoods
BP GO:0045860 positive regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0045931 positive regulation of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0045948 positive regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0046685 response to arsenic-containing substance IEP Predict GO terms from Neighborhoods
MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
BP GO:0048477 oogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048524 positive regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0050792 regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0051345 positive regulation of hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0052548 regulation of endopeptidase activity IEP Predict GO terms from Neighborhoods
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0060828 regulation of canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0061702 inflammasome complex IEP Predict GO terms from Neighborhoods
BP GO:0062207 regulation of pattern recognition receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0062208 positive regulation of pattern recognition receptor signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
BP GO:0070918 small regulatory ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IEP Predict GO terms from Neighborhoods
BP GO:0071243 cellular response to arsenic-containing substance IEP Predict GO terms from Neighborhoods
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0071902 positive regulation of protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0072559 NLRP3 inflammasome complex IEP Predict GO terms from Neighborhoods
BP GO:0090263 positive regulation of canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0097298 regulation of nucleus size IEP Predict GO terms from Neighborhoods
BP GO:0097307 response to farnesol IEP Predict GO terms from Neighborhoods
BP GO:0097308 cellular response to farnesol IEP Predict GO terms from Neighborhoods
BP GO:0098586 cellular response to virus IEP Predict GO terms from Neighborhoods
MF GO:0140666 annealing activity IEP Predict GO terms from Neighborhoods
BP GO:1900044 regulation of protein K63-linked ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:1900087 positive regulation of G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1900225 regulation of NLRP3 inflammasome complex assembly IEP Predict GO terms from Neighborhoods
BP GO:1900227 positive regulation of NLRP3 inflammasome complex assembly IEP Predict GO terms from Neighborhoods
BP GO:1900865 chloroplast RNA modification IEP Predict GO terms from Neighborhoods
BP GO:1901222 regulation of NIK/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:1901223 negative regulation of NIK/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:1901224 positive regulation of NIK/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:1901983 regulation of protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:1901985 positive regulation of protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:1901989 positive regulation of cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901992 positive regulation of mitotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902041 regulation of extrinsic apoptotic signaling pathway via death domain receptors IEP Predict GO terms from Neighborhoods
BP GO:1902042 negative regulation of extrinsic apoptotic signaling pathway via death domain receptors IEP Predict GO terms from Neighborhoods
BP GO:1902523 positive regulation of protein K63-linked ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:1902584 positive regulation of response to water deprivation IEP Predict GO terms from Neighborhoods
BP GO:1902806 regulation of cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902808 positive regulation of cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902914 regulation of protein polyubiquitination IEP Predict GO terms from Neighborhoods
BP GO:1902916 positive regulation of protein polyubiquitination IEP Predict GO terms from Neighborhoods
BP GO:1903322 positive regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1903608 protein localization to cytoplasmic stress granule IEP Predict GO terms from Neighborhoods
BP GO:1903900 regulation of viral life cycle IEP Predict GO terms from Neighborhoods
BP GO:2000045 regulation of G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:2000116 regulation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:2000117 negative regulation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:2001056 positive regulation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:2001233 regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001234 negative regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001236 regulation of extrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001237 negative regulation of extrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001242 regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001243 negative regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR032867 DYW_dom 568 690
IPR002885 Pentatricopeptide_repeat 293 339
IPR002885 Pentatricopeptide_repeat 393 440
IPR002885 Pentatricopeptide_repeat 194 223
IPR002885 Pentatricopeptide_repeat 164 192
IPR002885 Pentatricopeptide_repeat 469 490
IPR002885 Pentatricopeptide_repeat 268 292
IPR002885 Pentatricopeptide_repeat 297 328
IPR002885 Pentatricopeptide_repeat 396 429
IPR002885 Pentatricopeptide_repeat 194 224
No external refs found!