SOLTUB.AGRIA.G00000025173

Description : Pescadillo homolog

Gene families : OG_02_0009836 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000025173
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_159

Type	GO Term	Name	Evidence	Source
BP	GO:0000460	maturation of 5.8S rRNA	None	Extended
BP	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000470	maturation of LSU-rRNA	None	Extended
CC	GO:0000793	condensed chromosome	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005694	chromosome	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0007000	nucleolus organization	IEA	AHRD
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010001	glial cell differentiation	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0030687	preribosome, large subunit precursor	IEA	AHRD
BP	GO:0031017	exocrine pancreas development	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	IEA	AHRD
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0043021	ribonucleoprotein complex binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048709	oligodendrocyte differentiation	IEA	AHRD
BP	GO:0048732	gland development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051726	regulation of cell cycle	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070545	PeBoW complex	IEA	AHRD
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090069	regulation of ribosome biogenesis	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2000232	regulation of rRNA processing	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0001775	cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001890	placenta development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002252	immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002263	cell activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002285	lymphocyte activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002286	T cell activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002309	T cell proliferation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002366	leukocyte activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002521	leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003727	single-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003730	mRNA 3'-UTR binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005516	calmodulin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005840	ribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005844	polysome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005911	cell-cell junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006446	regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006915	apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006924	activation-induced cell death of T cells	IEP	Predict GO terms from Neighborhoods
BP	GO:0007165	signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0007369	gastrulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007507	heart development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007596	blood coagulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007599	hemostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0008022	protein C-terminus binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008143	poly(A) binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008266	poly(U) RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008283	cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008284	positive regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008494	translation activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009506	plasmodesma	IEP	Predict GO terms from Neighborhoods
BP	GO:0009895	negative regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009896	positive regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0010494	cytoplasmic stress granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0010942	positive regulation of cell death	IEP	Predict GO terms from Neighborhoods
CC	GO:0015935	small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019722	calcium-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0019932	second-messenger-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0022605	mammalian oogenesis stage	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0030054	cell junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0030098	lymphocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030217	T cell differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030425	dendrite	IEP	Predict GO terms from Neighborhoods
BP	GO:0031047	gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031124	mRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031252	cell leading edge	IEP	Predict GO terms from Neighborhoods
BP	GO:0031330	negative regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031370	eukaryotic initiation factor 4G binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031929	TOR signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032868	response to insulin	IEP	Predict GO terms from Neighborhoods
BP	GO:0032943	mononuclear cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033077	T cell differentiation in thymus	IEP	Predict GO terms from Neighborhoods
BP	GO:0033500	carbohydrate homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035556	intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
CC	GO:0035770	ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0042098	T cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042110	T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042593	glucose homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0042788	polysomal ribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0042995	cell projection	IEP	Predict GO terms from Neighborhoods
CC	GO:0043005	neuron projection	IEP	Predict GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043065	positive regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043066	negative regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043068	positive regulation of programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0043069	negative regulation of programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0043434	response to peptide hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:0043487	regulation of RNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043488	regulation of mRNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043489	RNA stabilization	IEP	Predict GO terms from Neighborhoods
MF	GO:0043621	protein self-association	IEP	Predict GO terms from Neighborhoods
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0044297	cell body	IEP	Predict GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0044770	cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044772	mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044843	cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0045069	regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045070	positive regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0045202	synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0045321	leukocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045471	response to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046649	lymphocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046651	lymphocyte proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048255	mRNA stabilization	IEP	Predict GO terms from Neighborhoods
CC	GO:0048471	perinuclear region of cytoplasm	IEP	Predict GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048524	positive regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048598	embryonic morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048821	erythrocyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050792	regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050817	coagulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050878	regulation of body fluid levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060211	regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
BP	GO:0060212	negative regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
BP	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
BP	GO:0061013	regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061014	positive regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061515	myeloid cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0065008	regulation of biological quality	IEP	Predict GO terms from Neighborhoods
CC	GO:0070161	anchoring junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0070227	lymphocyte apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070231	T cell apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070661	leukocyte proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0070717	poly-purine tract binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071014	post-mRNA release spliceosomal complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071361	cellular response to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071887	leukocyte apoptotic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0097306	cellular response to alcohol	IEP	Predict GO terms from Neighborhoods
CC	GO:0099080	supramolecular complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0120025	plasma membrane bounded cell projection	IEP	Predict GO terms from Neighborhoods
BP	GO:1900151	regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
BP	GO:1900152	negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
BP	GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
BP	GO:1901652	response to peptide	IEP	Predict GO terms from Neighborhoods
BP	GO:1901888	regulation of cell junction assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1901889	negative regulation of cell junction assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902369	negative regulation of RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902373	negative regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903131	mononuclear cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903311	regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903312	negative regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903313	positive regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903347	negative regulation of bicellular tight junction assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903900	regulation of viral life cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:1990124	messenger ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000622	regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predict GO terms from Neighborhoods
BP	GO:2000623	negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predict GO terms from Neighborhoods
BP	GO:2000810	regulation of bicellular tight junction assembly	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036420	BRCT_dom_sf	338	428
IPR010613	PES	10	274
IPR001357	BRCT_dom	339	425

External Links

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SOLTUB.AGRIA.G00000025173

Expression Profile

Co-expression Networks

Functional Annotation