SOLTUB.AGRIA.G00000025237


Description : Endoribonuclease Dicer homolog 3


Gene families : OG_02_0009856 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000025237
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_46


Type GO Term Name Evidence Source
BP GO:0002009 morphogenesis of an epithelium IEA AHRD
MF GO:0003725 double-stranded RNA binding IEA AHRD
MF GO:0004525 ribonuclease III activity IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0006353 DNA-templated transcription termination IEA AHRD
BP GO:0006355 regulation of DNA-templated transcription IEA AHRD
BP GO:0006401 RNA catabolic process IEA AHRD
BP GO:0006996 organelle organization IEA AHRD
BP GO:0007417 central nervous system development IEA AHRD
BP GO:0008283 cell population proliferation IEA AHRD
BP GO:0008544 epidermis development IEA AHRD
BP GO:0009790 embryo development IEA AHRD
BP GO:0009944 polarity specification of adaxial/abaxial axis IEA AHRD
BP GO:0010050 vegetative phase change IEA AHRD
BP GO:0010216 maintenance of DNA methylation IEA AHRD
BP GO:0010267 ta-siRNA processing IEA AHRD
BP GO:0010492 maintenance of shoot apical meristem identity IEA AHRD
BP GO:0010599 lsiRNA processing IEA AHRD
BP GO:0010628 positive regulation of gene expression IEA AHRD
BP GO:0014013 regulation of gliogenesis IEA AHRD
BP GO:0022402 cell cycle process IEA AHRD
BP GO:0030182 neuron differentiation IEA AHRD
CC GO:0031332 RNAi effector complex IEA AHRD
BP GO:0034470 ncRNA processing IEA AHRD
BP GO:0035196 miRNA processing IEA AHRD
BP GO:0035295 tube development IEA AHRD
BP GO:0036404 obsolete conversion of ds siRNA to ss siRNA IEA AHRD
BP GO:0048513 animal organ development IEA AHRD
BP GO:0048589 developmental growth IEA AHRD
BP GO:0048608 reproductive structure development IEA AHRD
BP GO:0051214 RNAi-mediated antiviral immunity against RNA virus IEA AHRD
BP GO:0051241 negative regulation of multicellular organismal process IEA AHRD
BP GO:0051253 negative regulation of RNA metabolic process IEA AHRD
BP GO:0051254 positive regulation of RNA metabolic process IEA AHRD
BP GO:0051301 cell division IEA AHRD
MF GO:0061980 regulatory RNA binding IEA AHRD
BP GO:0070922 RISC complex assembly IEA AHRD
BP GO:0072359 circulatory system development IEA AHRD
BP GO:0090501 RNA phosphodiester bond hydrolysis IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0000082 G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
CC GO:0000307 cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
MF GO:0000900 mRNA regulatory element binding translation repressor activity IEP Predict GO terms from Neighborhoods
MF GO:0001664 G protein-coupled receptor binding IEP Predict GO terms from Neighborhoods
CC GO:0002178 palmitoyltransferase complex IEP Predict GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Predict GO terms from Neighborhoods
CC GO:0005798 Golgi-associated vesicle IEP Predict GO terms from Neighborhoods
BP GO:0006356 regulation of transcription by RNA polymerase I IEP Predict GO terms from Neighborhoods
BP GO:0006497 protein lipidation IEP Predict GO terms from Neighborhoods
BP GO:0006612 protein targeting to membrane IEP Predict GO terms from Neighborhoods
BP GO:0009553 embryo sac development IEP Predict GO terms from Neighborhoods
BP GO:0009910 negative regulation of flower development IEP Predict GO terms from Neighborhoods
BP GO:0010022 meristem determinacy IEP Predict GO terms from Neighborhoods
BP GO:0010077 maintenance of inflorescence meristem identity IEP Predict GO terms from Neighborhoods
BP GO:0010093 specification of floral organ identity IEP Predict GO terms from Neighborhoods
BP GO:0010094 specification of carpel identity IEP Predict GO terms from Neighborhoods
BP GO:0010219 regulation of vernalization response IEP Predict GO terms from Neighborhoods
BP GO:0010220 positive regulation of vernalization response IEP Predict GO terms from Neighborhoods
BP GO:0010440 stomatal lineage progression IEP Predict GO terms from Neighborhoods
BP GO:0010444 guard mother cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010582 floral meristem determinacy IEP Predict GO terms from Neighborhoods
MF GO:0016409 palmitoyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016417 S-acyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0018198 peptidyl-cysteine modification IEP Predict GO terms from Neighborhoods
BP GO:0018230 peptidyl-L-cysteine S-palmitoylation IEP Predict GO terms from Neighborhoods
BP GO:0018231 peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine IEP Predict GO terms from Neighborhoods
BP GO:0018345 protein palmitoylation IEP Predict GO terms from Neighborhoods
MF GO:0019207 kinase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0019706 protein-cysteine S-palmitoyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0019707 protein-cysteine S-acyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0019887 protein kinase regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0030135 coated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030136 clathrin-coated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030140 trans-Golgi network transport vesicle IEP Predict GO terms from Neighborhoods
MF GO:0030371 translation repressor activity IEP Predict GO terms from Neighborhoods
MF GO:0030544 Hsp70 protein binding IEP Predict GO terms from Neighborhoods
BP GO:0031048 small non-coding RNA-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Predict GO terms from Neighborhoods
CC GO:0031228 intrinsic component of Golgi membrane IEP Predict GO terms from Neighborhoods
BP GO:0031399 regulation of protein modification process IEP Predict GO terms from Neighborhoods
BP GO:0031445 regulation of heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031452 negative regulation of heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031507 heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031554 regulation of termination of DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0033562 co-transcriptional gene silencing by RNA interference machinery IEP Predict GO terms from Neighborhoods
CC GO:0034399 nuclear periphery IEP Predict GO terms from Neighborhoods
BP GO:0035195 miRNA-mediated gene silencing IEP Predict GO terms from Neighborhoods
CC GO:0035618 root hair IEP Predict GO terms from Neighborhoods
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0043244 regulation of protein-containing complex disassembly IEP Predict GO terms from Neighborhoods
MF GO:0043849 Ras palmitoyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0044770 cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:0044772 mitotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:0044843 cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
CC GO:0045171 intercellular bridge IEP Predict GO terms from Neighborhoods
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Predict GO terms from Neighborhoods
BP GO:0048449 floral organ formation IEP Predict GO terms from Neighborhoods
BP GO:0048455 stamen formation IEP Predict GO terms from Neighborhoods
BP GO:0048459 floral whorl structural organization IEP Predict GO terms from Neighborhoods
BP GO:0048532 anatomical structure arrangement IEP Predict GO terms from Neighborhoods
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048832 specification of plant organ number IEP Predict GO terms from Neighborhoods
BP GO:0048833 specification of floral organ number IEP Predict GO terms from Neighborhoods
MF GO:0050780 dopamine receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0051570 regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0060026 convergent extension IEP Predict GO terms from Neighborhoods
BP GO:0060027 convergent extension involved in gastrulation IEP Predict GO terms from Neighborhoods
BP GO:0060566 positive regulation of termination of DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0061187 regulation of rDNA heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0061188 negative regulation of ribosomal DNA heterochromatin formation IEP Predict GO terms from Neighborhoods
MF GO:0061578 Lys63-specific deubiquitinase activity IEP Predict GO terms from Neighborhoods
BP GO:0070314 G1 to G0 transition IEP Predict GO terms from Neighborhoods
BP GO:0070316 regulation of G0 to G1 transition IEP Predict GO terms from Neighborhoods
BP GO:0070317 negative regulation of G0 to G1 transition IEP Predict GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Predict GO terms from Neighborhoods
BP GO:0070828 heterochromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0080060 integument development IEP Predict GO terms from Neighborhoods
BP GO:0080112 seed growth IEP Predict GO terms from Neighborhoods
BP GO:0090701 specification of plant organ identity IEP Predict GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Predict GO terms from Neighborhoods
BP GO:0120261 regulation of heterochromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0120262 negative regulation of heterochromatin organization IEP Predict GO terms from Neighborhoods
BP GO:1900457 regulation of brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1900458 negative regulation of brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1900618 regulation of shoot system morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:1901371 regulation of leaf morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:1902275 regulation of chromatin organization IEP Predict GO terms from Neighborhoods
CC GO:1902554 serine/threonine protein kinase complex IEP Predict GO terms from Neighborhoods
CC GO:1902911 protein kinase complex IEP Predict GO terms from Neighborhoods
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:1904594 regulation of termination of RNA polymerase II transcription IEP Predict GO terms from Neighborhoods
BP GO:1904595 positive regulation of termination of RNA polymerase II transcription IEP Predict GO terms from Neighborhoods
BP GO:1905268 negative regulation of chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:1905421 regulation of plant organ morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:1990188 euchromatin binding IEP Predict GO terms from Neighborhoods
CC GO:1990234 transferase complex IEP Predict GO terms from Neighborhoods
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000999 RNase_III_dom 133 239
IPR036389 RNase_III_sf 97 261
No external refs found!