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  5. SOLTUB.AGRIA.G00000025907

SOLTUB.AGRIA.G00000025907


Description : Vacuolar sorting protein 39


Gene families : OG_02_0001783 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000025907
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_36


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA AHRD
CC GO:0005764 lysosome IEA AHRD
CC GO:0005768 endosome IEA AHRD
BP GO:0006886 intracellular protein transport IEA AHRD
BP GO:0006914 autophagy IEA AHRD
BP GO:0007033 vacuole organization IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
CC GO:0009705 plant-type vacuole membrane IEA AHRD
CC GO:0030897 HOPS complex IEA AHRD
BP GO:0034058 endosomal vesicle fusion IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0000165 MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predict GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predict GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predict GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
CC GO:0000791 euchromatin IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
BP GO:0000912 assembly of actomyosin apparatus involved in cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0000915 actomyosin contractile ring assembly IEP Predict GO terms from Neighborhoods
BP GO:0000919 cell plate assembly IEP Predict GO terms from Neighborhoods
CC GO:0000935 division septum IEP Predict GO terms from Neighborhoods
BP GO:0001889 liver development IEP Predict GO terms from Neighborhoods
BP GO:0003006 developmental process involved in reproduction IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0004673 protein histidine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004709 MAP kinase kinase kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005703 polytene chromosome puff IEP Predict GO terms from Neighborhoods
CC GO:0005705 polytene chromosome interband IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005731 nucleolus organizer region IEP Predict GO terms from Neighborhoods
CC GO:0005770 late endosome IEP Predict GO terms from Neighborhoods
CC GO:0005816 spindle pole body IEP Predict GO terms from Neighborhoods
CC GO:0005829 cytosol IEP Predict GO terms from Neighborhoods
CC GO:0005844 polysome IEP Predict GO terms from Neighborhoods
CC GO:0005856 cytoskeleton IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006355 regulation of DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006405 RNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006406 mRNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006904 vesicle docking involved in exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0007032 endosome organization IEP Predict GO terms from Neighborhoods
BP GO:0007034 vacuolar transport IEP Predict GO terms from Neighborhoods
BP GO:0007041 lysosomal transport IEP Predict GO terms from Neighborhoods
BP GO:0007165 signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0007264 small GTPase mediated signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0007530 sex determination IEP Predict GO terms from Neighborhoods
BP GO:0007632 visual behavior IEP Predict GO terms from Neighborhoods
BP GO:0007634 optokinetic behavior IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Predict GO terms from Neighborhoods
MF GO:0008327 methyl-CpG binding IEP Predict GO terms from Neighborhoods
BP GO:0008333 endosome to lysosome transport IEP Predict GO terms from Neighborhoods
BP GO:0008360 regulation of cell shape IEP Predict GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0009628 response to abiotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009712 catechol-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009718 anthocyanin-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009720 detection of hormone stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009726 detection of endogenous stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009727 detection of ethylene stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009733 response to auxin IEP Predict GO terms from Neighborhoods
BP GO:0009889 regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009893 positive regulation of metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0009927 histidine phosphotransfer kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0010008 endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0010105 negative regulation of ethylene-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010162 seed dormancy process IEP Predict GO terms from Neighborhoods
BP GO:0010171 body morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010172 embryonic body morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Predict GO terms from Neighborhoods
BP GO:0010265 SCF complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0010324 membrane invagination IEP Predict GO terms from Neighborhoods
CC GO:0010369 chromocenter IEP Predict GO terms from Neighborhoods
CC GO:0010370 perinucleolar chromocenter IEP Predict GO terms from Neighborhoods
BP GO:0010468 regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010514 induction of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Predict GO terms from Neighborhoods
CC GO:0012506 vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0015629 actin cytoskeleton IEP Predict GO terms from Neighborhoods
BP GO:0015721 bile acid and bile salt transport IEP Predict GO terms from Neighborhoods
BP GO:0015994 chlorophyll metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0015995 chlorophyll biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016192 vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0016441 post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0017025 TBP-class protein binding IEP Predict GO terms from Neighborhoods
BP GO:0018106 peptidyl-histidine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0018202 peptidyl-histidine modification IEP Predict GO terms from Neighborhoods
BP GO:0018904 ether metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0018992 germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019222 regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0022406 membrane docking IEP Predict GO terms from Neighborhoods
BP GO:0022414 reproductive process IEP Predict GO terms from Neighborhoods
CC GO:0030428 cell septum IEP Predict GO terms from Neighborhoods
CC GO:0030659 cytoplasmic vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0030832 regulation of actin filament length IEP Predict GO terms from Neighborhoods
BP GO:0030866 cortical actin cytoskeleton organization IEP Predict GO terms from Neighborhoods
CC GO:0030874 nucleolar chromatin IEP Predict GO terms from Neighborhoods
BP GO:0031032 actomyosin structure organization IEP Predict GO terms from Neighborhoods
BP GO:0031047 gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0031100 animal organ regeneration IEP Predict GO terms from Neighborhoods
BP GO:0031137 regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031139 positive regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031156 regulation of sorocarp development IEP Predict GO terms from Neighborhoods
BP GO:0031175 neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0031272 regulation of pseudopodium assembly IEP Predict GO terms from Neighborhoods
BP GO:0031325 positive regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031326 regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0031334 positive regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0031491 nucleosome binding IEP Predict GO terms from Neighborhoods
CC GO:0032154 cleavage furrow IEP Predict GO terms from Neighborhoods
BP GO:0032465 regulation of cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0032467 positive regulation of cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0032502 developmental process IEP Predict GO terms from Neighborhoods
BP GO:0032506 cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:0032784 regulation of DNA-templated transcription elongation IEP Predict GO terms from Neighborhoods
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Predict GO terms from Neighborhoods
BP GO:0032954 regulation of cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:0032956 regulation of actin cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0032970 regulation of actin filament-based process IEP Predict GO terms from Neighborhoods
BP GO:0033013 tetrapyrrole metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Predict GO terms from Neighborhoods
CC GO:0033263 CORVET complex IEP Predict GO terms from Neighborhoods
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0035101 FACT complex IEP Predict GO terms from Neighborhoods
CC GO:0035145 exon-exon junction complex IEP Predict GO terms from Neighborhoods
BP GO:0035194 post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0035329 hippo signaling IEP Predict GO terms from Neighborhoods
BP GO:0036089 cleavage furrow formation IEP Predict GO terms from Neighborhoods
BP GO:0036211 protein modification process IEP Predict GO terms from Neighborhoods
MF GO:0038199 ethylene receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0040021 hermaphrodite germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0040022 feminization of hermaphroditic germ-line IEP Predict GO terms from Neighborhoods
BP GO:0042144 vacuole fusion, non-autophagic IEP Predict GO terms from Neighborhoods
MF GO:0042162 telomeric DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043254 regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0043473 pigmentation IEP Predict GO terms from Neighborhoods
BP GO:0043485 endosome to pigment granule transport IEP Predict GO terms from Neighborhoods
BP GO:0043622 cortical microtubule organization IEP Predict GO terms from Neighborhoods
BP GO:0044087 regulation of cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0044089 positive regulation of cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0044732 mitotic spindle pole body IEP Predict GO terms from Neighborhoods
BP GO:0044837 actomyosin contractile ring organization IEP Predict GO terms from Neighborhoods
BP GO:0045176 apical protein localization IEP Predict GO terms from Neighborhoods
BP GO:0045292 mRNA cis splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0045893 positive regulation of DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0045898 regulation of RNA polymerase II transcription preinitiation complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0045992 negative regulation of embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0045995 regulation of embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046649 lymphocyte activation IEP Predict GO terms from Neighborhoods
MF GO:0047485 protein N-terminus binding IEP Predict GO terms from Neighborhoods
BP GO:0048066 developmental pigmentation IEP Predict GO terms from Neighborhoods
BP GO:0048069 eye pigmentation IEP Predict GO terms from Neighborhoods
BP GO:0048278 vesicle docking IEP Predict GO terms from Neighborhoods
BP GO:0048518 positive regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0048519 negative regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0048522 positive regulation of cellular process IEP Predict GO terms from Neighborhoods
BP GO:0048571 long-day photoperiodism IEP Predict GO terms from Neighborhoods
BP GO:0050665 hydrogen peroxide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0050789 regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0050794 regulation of cellular process IEP Predict GO terms from Neighborhoods
BP GO:0050896 response to stimulus IEP Predict GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0051130 positive regulation of cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051239 regulation of multicellular organismal process IEP Predict GO terms from Neighborhoods
BP GO:0051252 regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051254 positive regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051469 vesicle fusion with vacuole IEP Predict GO terms from Neighborhoods
BP GO:0051493 regulation of cytoskeleton organization IEP Predict GO terms from Neighborhoods
MF GO:0051740 ethylene binding IEP Predict GO terms from Neighborhoods
BP GO:0051781 positive regulation of cell division IEP Predict GO terms from Neighborhoods
BP GO:0052482 defense response by cell wall thickening IEP Predict GO terms from Neighborhoods
BP GO:0052544 defense response by callose deposition in cell wall IEP Predict GO terms from Neighborhoods
BP GO:0060036 notochord cell vacuolation IEP Predict GO terms from Neighborhoods
BP GO:0060255 regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0060260 regulation of transcription initiation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0060261 positive regulation of transcription initiation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0060491 regulation of cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0061387 regulation of extent of cell growth IEP Predict GO terms from Neighborhoods
CC GO:0061702 inflammasome complex IEP Predict GO terms from Neighborhoods
BP GO:0065007 biological regulation IEP Predict GO terms from Neighborhoods
BP GO:0070298 negative regulation of phosphorelay signal transduction system IEP Predict GO terms from Neighborhoods
CC GO:0070971 endoplasmic reticulum exit site IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071014 post-mRNA release spliceosomal complex IEP Predict GO terms from Neighborhoods
BP GO:0071507 pheromone response MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0072328 alkene binding IEP Predict GO terms from Neighborhoods
CC GO:0072686 mitotic spindle IEP Predict GO terms from Neighborhoods
BP GO:0080090 regulation of primary metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0097576 vacuole fusion IEP Predict GO terms from Neighborhoods
BP GO:0099024 plasma membrane invagination IEP Predict GO terms from Neighborhoods
BP GO:0110053 regulation of actin filament organization IEP Predict GO terms from Neighborhoods
BP GO:0120032 regulation of plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0140029 exocytic process IEP Predict GO terms from Neighborhoods
BP GO:0140056 organelle localization by membrane tethering IEP Predict GO terms from Neighborhoods
MF GO:0140296 general transcription initiation factor binding IEP Predict GO terms from Neighborhoods
MF GO:0140299 small molecule sensor activity IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902412 regulation of mitotic cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1903409 reactive oxygen species biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903436 regulation of mitotic cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:1903438 positive regulation of mitotic cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:1903490 positive regulation of mitotic cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
BP GO:2000026 regulation of multicellular organismal development IEP Predict GO terms from Neighborhoods
BP GO:2000142 regulation of DNA-templated transcription initiation IEP Predict GO terms from Neighborhoods
BP GO:2000144 positive regulation of DNA-templated transcription initiation IEP Predict GO terms from Neighborhoods
BP GO:2000434 regulation of protein neddylation IEP Predict GO terms from Neighborhoods
BP GO:2000435 negative regulation of protein neddylation IEP Predict GO terms from Neighborhoods
BP GO:2000904 regulation of starch metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2001141 regulation of RNA biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 879 987
IPR001180 CNH_dom 115 286
IPR000547 Clathrin_H-chain/VPS_repeat 638 768
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 508 615
No external refs found!