SOLTUB.AGRIA.G00000026003

Description : RING/U-box superfamily protein

Gene families : OG_02_0015900 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026003
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_168

Type	GO Term	Name	Evidence	Source
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007409	axonogenesis	IEA	AHRD
BP	GO:0007549	dosage compensation	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009048	dosage compensation by inactivation of X chromosome	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009908	flower development	IEA	AHRD
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009967	positive regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0032990	cell part morphogenesis	None	Extended
CC	GO:0032991	protein-containing complex	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040008	regulation of growth	IEA	AHRD
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043433	negative regulation of DNA-binding transcription factor activity	IEA	AHRD
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044092	negative regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048736	appendage development	None	Extended
BP	GO:0048812	neuron projection morphogenesis	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048858	cell projection morphogenesis	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	IEA	AHRD
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051090	regulation of DNA-binding transcription factor activity	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0060173	limb development	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060816	random inactivation of X chromosome	IEA	AHRD
MF	GO:0061630	ubiquitin protein ligase activity	IEA	AHRD
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090092	regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	None	Extended
BP	GO:0090100	positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEA	AHRD
BP	GO:0090287	regulation of cellular response to growth factor stimulus	IEA	AHRD
BP	GO:0090567	reproductive shoot system development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120039	plasma membrane bounded cell projection morphogenesis	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1900095	regulation of dosage compensation by inactivation of X chromosome	IEA	AHRD
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
CC	GO:0000502	proteasome complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0002090	regulation of receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0002091	negative regulation of receptor internalization	IEP	Predict GO terms from Neighborhoods
CC	GO:0005622	intracellular anatomical structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0005776	autophagosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006282	regulation of DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006914	autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0008277	regulation of G protein-coupled receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009895	negative regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010506	regulation of autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010507	negative regulation of autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010569	regulation of double-strand break repair via homologous recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010959	regulation of metal ion transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0016234	inclusion body	IEP	Predict GO terms from Neighborhoods
CC	GO:0016235	aggresome	IEP	Predict GO terms from Neighborhoods
BP	GO:0016236	macroautophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0016241	regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0016242	negative regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030100	regulation of endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030474	spindle pole body duplication	IEP	Predict GO terms from Neighborhoods
MF	GO:0030674	protein-macromolecule adaptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031023	microtubule organizing center organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031330	negative regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031396	regulation of protein ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0031398	positive regulation of protein ubiquitination	IEP	Predict GO terms from Neighborhoods
MF	GO:0031593	polyubiquitin modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031595	nuclear proteasome complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031597	cytosolic proteasome complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032409	regulation of transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032410	negative regulation of transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032412	regulation of ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032413	negative regulation of ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034121	regulation of toll-like receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0034122	negative regulation of toll-like receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0034139	regulation of toll-like receptor 3 signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0034140	negative regulation of toll-like receptor 3 signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0034763	negative regulation of transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034765	regulation of ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034766	negative regulation of ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035973	aggrephagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0036294	cellular response to decreased oxygen levels	IEP	Predict GO terms from Neighborhoods
MF	GO:0036435	K48-linked polyubiquitin modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042176	regulation of protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043242	negative regulation of protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043271	negative regulation of ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0044088	regulation of vacuole organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045732	positive regulation of protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045738	negative regulation of DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0045806	negative regulation of endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045862	positive regulation of proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045910	negative regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0048259	regulation of receptor-mediated endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048261	negative regulation of receptor-mediated endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051051	negative regulation of transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051300	spindle pole body organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051924	regulation of calcium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051926	negative regulation of calcium ion transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0060090	molecular adaptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060627	regulation of vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0061136	regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061912	selective autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Predict GO terms from Neighborhoods
BP	GO:0062207	regulation of pattern recognition receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0071453	cellular response to oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0071456	cellular response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0072665	protein localization to vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0090734	site of DNA damage	IEP	Predict GO terms from Neighborhoods
MF	GO:0140030	modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1900186	negative regulation of clathrin-dependent endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:1900407	regulation of cellular response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1901019	regulation of calcium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901020	negative regulation of calcium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901096	regulation of autophagosome maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901097	negative regulation of autophagosome maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901339	regulation of store-operated calcium channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901340	negative regulation of store-operated calcium channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901800	positive regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902115	regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902175	regulation of oxidative stress-induced intrinsic apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1902882	regulation of response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1903050	regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903052	positive regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903069	regulation of ER-associated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903071	positive regulation of ER-associated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903169	regulation of calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903170	negative regulation of calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903201	regulation of oxidative stress-induced cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
BP	GO:1903322	positive regulation of protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
BP	GO:1904020	regulation of G protein-coupled receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:1904021	negative regulation of G protein-coupled receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:1904062	regulation of cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904063	negative regulation of cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904292	regulation of ERAD pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1904294	positive regulation of ERAD pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1905369	endopeptidase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1905897	regulation of response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1905898	positive regulation of response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
BP	GO:2000042	negative regulation of double-strand break repair via homologous recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:2000058	regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000369	regulation of clathrin-dependent endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000779	regulation of double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:2000780	negative regulation of double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:2000785	regulation of autophagosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2001021	negative regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2001233	regulation of apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2001242	regulation of intrinsic apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2001257	regulation of cation channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2001258	negative regulation of cation channel activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	613	655

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SOLTUB.AGRIA.G00000026003

Expression Profile

Co-expression Networks

Functional Annotation