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  5. SOLTUB.AGRIA.G00000026016

SOLTUB.AGRIA.G00000026016


Description : 30S ribosomal protein S20, putative


Gene families : OG_02_0015910 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026016
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_227


Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA AHRD
CC GO:0009570 chloroplast stroma IEA AHRD
CC GO:0009941 chloroplast envelope IEA AHRD
CC GO:0015935 small ribosomal subunit IEA AHRD
MF GO:0070181 small ribosomal subunit rRNA binding IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0000036 acyl carrier activity IEP Predict GO terms from Neighborhoods
CC GO:0000314 organellar small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0002347 response to tumor cell IEP Predict GO terms from Neighborhoods
BP GO:0002357 defense response to tumor cell IEP Predict GO terms from Neighborhoods
BP GO:0002532 production of molecular mediator involved in inflammatory response IEP Predict GO terms from Neighborhoods
BP GO:0002536 respiratory burst involved in inflammatory response IEP Predict GO terms from Neighborhoods
BP GO:0002679 respiratory burst involved in defense response IEP Predict GO terms from Neighborhoods
BP GO:0002695 negative regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
MF GO:0003727 single-stranded RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003735 structural constituent of ribosome IEP Predict GO terms from Neighborhoods
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0004427 inorganic diphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0004550 nucleoside diphosphate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predict GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Predict GO terms from Neighborhoods
MF GO:0005242 inward rectifier potassium channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005527 macrolide binding IEP Predict GO terms from Neighborhoods
CC GO:0005622 intracellular anatomical structure IEP Predict GO terms from Neighborhoods
CC GO:0005759 mitochondrial matrix IEP Predict GO terms from Neighborhoods
CC GO:0005763 mitochondrial small ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Predict GO terms from Neighborhoods
CC GO:0005960 glycine cleavage complex IEP Predict GO terms from Neighborhoods
BP GO:0006183 GTP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006228 UTP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006241 CTP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006412 translation IEP Predict GO terms from Neighborhoods
BP GO:0006457 protein folding IEP Predict GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006544 glycine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006546 glycine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006662 glycerol ether metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006782 protoporphyrinogen IX biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008150 biological_process IEP Predict GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008187 poly-pyrimidine tract binding IEP Predict GO terms from Neighborhoods
MF GO:0008266 poly(U) RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008379 thioredoxin peroxidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008430 selenium binding IEP Predict GO terms from Neighborhoods
MF GO:0008785 alkyl hydroperoxide reductase activity IEP Predict GO terms from Neighborhoods
BP GO:0009058 biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009071 serine family amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009249 protein lipoylation IEP Predict GO terms from Neighborhoods
CC GO:0009503 thylakoid light-harvesting complex IEP Predict GO terms from Neighborhoods
CC GO:0009507 chloroplast IEP Predict GO terms from Neighborhoods
CC GO:0009508 plastid chromosome IEP Predict GO terms from Neighborhoods
CC GO:0009515 granal stacked thylakoid IEP Predict GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Predict GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Predict GO terms from Neighborhoods
CC GO:0009534 chloroplast thylakoid IEP Predict GO terms from Neighborhoods
CC GO:0009535 chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0009536 plastid IEP Predict GO terms from Neighborhoods
CC GO:0009543 chloroplast thylakoid lumen IEP Predict GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Predict GO terms from Neighborhoods
BP GO:0009644 response to high light intensity IEP Predict GO terms from Neighborhoods
CC GO:0009654 photosystem II oxygen evolving complex IEP Predict GO terms from Neighborhoods
BP GO:0009657 plastid organization IEP Predict GO terms from Neighborhoods
BP GO:0009773 photosynthetic electron transport in photosystem I IEP Predict GO terms from Neighborhoods
BP GO:0009955 adaxial/abaxial pattern specification IEP Predict GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Predict GO terms from Neighborhoods
BP GO:0010206 photosystem II repair IEP Predict GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Predict GO terms from Neighborhoods
CC GO:0010319 stromule IEP Predict GO terms from Neighborhoods
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0015271 outward rectifier potassium channel activity IEP Predict GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Predict GO terms from Neighborhoods
BP GO:0015994 chlorophyll metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0015995 chlorophyll biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016168 chlorophyll binding IEP Predict GO terms from Neighborhoods
CC GO:0016589 NURF complex IEP Predict GO terms from Neighborhoods
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predict GO terms from Neighborhoods
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016830 carbon-carbon lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016831 carboxy-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016859 cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
BP GO:0018158 protein oxidation IEP Predict GO terms from Neighborhoods
BP GO:0018171 peptidyl-cysteine oxidation IEP Predict GO terms from Neighborhoods
BP GO:0018298 obsolete protein-chromophore linkage IEP Predict GO terms from Neighborhoods
BP GO:0019430 removal of superoxide radicals IEP Predict GO terms from Neighborhoods
BP GO:0019464 glycine decarboxylation via glycine cleavage system IEP Predict GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019747 regulation of isoprenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0022408 negative regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
CC GO:0022625 cytosolic large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0022900 electron transport chain IEP Predict GO terms from Neighborhoods
CC GO:0030076 light-harvesting complex IEP Predict GO terms from Neighborhoods
BP GO:0030091 protein repair IEP Predict GO terms from Neighborhoods
CC GO:0030093 chloroplast photosystem I IEP Predict GO terms from Neighborhoods
BP GO:0030193 regulation of blood coagulation IEP Predict GO terms from Neighborhoods
BP GO:0030194 positive regulation of blood coagulation IEP Predict GO terms from Neighborhoods
CC GO:0030288 outer membrane-bounded periplasmic space IEP Predict GO terms from Neighborhoods
BP GO:0030656 regulation of vitamin metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0030674 protein-macromolecule adaptor activity IEP Predict GO terms from Neighborhoods
CC GO:0031010 ISWI-type complex IEP Predict GO terms from Neighborhoods
CC GO:0031090 organelle membrane IEP Predict GO terms from Neighborhoods
MF GO:0031177 phosphopantetheine binding IEP Predict GO terms from Neighborhoods
BP GO:0031664 regulation of lipopolysaccharide-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0031665 negative regulation of lipopolysaccharide-mediated signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0031976 plastid thylakoid IEP Predict GO terms from Neighborhoods
CC GO:0031977 thylakoid lumen IEP Predict GO terms from Neighborhoods
CC GO:0031978 plastid thylakoid lumen IEP Predict GO terms from Neighborhoods
BP GO:0032088 negative regulation of NF-kappaB transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0032239 regulation of nucleobase-containing compound transport IEP Predict GO terms from Neighborhoods
BP GO:0032241 positive regulation of nucleobase-containing compound transport IEP Predict GO terms from Neighborhoods
BP GO:0032544 plastid translation IEP Predict GO terms from Neighborhoods
BP GO:0032943 mononuclear cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0033013 tetrapyrrole metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035076 ecdysone receptor-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0035206 regulation of hemocyte proliferation IEP Predict GO terms from Neighborhoods
BP GO:0042098 T cell proliferation IEP Predict GO terms from Neighborhoods
CC GO:0042170 plastid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042391 regulation of membrane potential IEP Predict GO terms from Neighborhoods
CC GO:0042597 periplasmic space IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042743 hydrogen peroxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042744 hydrogen peroxide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042766 obsolete nucleosome mobilization IEP Predict GO terms from Neighborhoods
MF GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
MF GO:0043028 cysteine-type endopeptidase regulator activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043487 regulation of RNA stability IEP Predict GO terms from Neighborhoods
MF GO:0043495 protein-membrane adaptor activity IEP Predict GO terms from Neighborhoods
BP GO:0043603 cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044249 cellular biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044260 cellular macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0044620 ACP phosphopantetheine attachment site binding IEP Predict GO terms from Neighborhoods
BP GO:0045580 regulation of T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045581 negative regulation of T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045620 negative regulation of lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045828 positive regulation of isoprenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046036 CTP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046039 GTP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046051 UTP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046136 positive regulation of vitamin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046501 protoporphyrinogen IX metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046651 lymphocyte proliferation IEP Predict GO terms from Neighborhoods
BP GO:0046831 regulation of RNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0046833 positive regulation of RNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0046889 positive regulation of lipid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Predict GO terms from Neighborhoods
BP GO:0048538 thymus development IEP Predict GO terms from Neighborhoods
BP GO:0048564 photosystem I assembly IEP Predict GO terms from Neighborhoods
BP GO:0050818 regulation of coagulation IEP Predict GO terms from Neighborhoods
BP GO:0050820 positive regulation of coagulation IEP Predict GO terms from Neighborhoods
BP GO:0050866 negative regulation of cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050868 negative regulation of T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0051092 positive regulation of NF-kappaB transcription factor activity IEP Predict GO terms from Neighborhoods
MF GO:0051192 prosthetic group binding IEP Predict GO terms from Neighborhoods
BP GO:0051250 negative regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051881 regulation of mitochondrial membrane potential IEP Predict GO terms from Neighborhoods
MF GO:0051920 peroxiredoxin activity IEP Predict GO terms from Neighborhoods
CC GO:0055035 plastid thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0061041 regulation of wound healing IEP Predict GO terms from Neighborhoods
BP GO:0070141 response to UV-A IEP Predict GO terms from Neighborhoods
MF GO:0070180 large ribosomal subunit rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0070661 leukocyte proliferation IEP Predict GO terms from Neighborhoods
BP GO:0071344 diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0071452 cellular response to singlet oxygen IEP Predict GO terms from Neighborhoods
BP GO:0071492 cellular response to UV-A IEP Predict GO terms from Neighborhoods
BP GO:0071704 organic substance metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072593 reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0089701 U2AF complex IEP Predict GO terms from Neighborhoods
BP GO:0090056 regulation of chlorophyll metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090303 positive regulation of wound healing IEP Predict GO terms from Neighborhoods
BP GO:0090391 granum assembly IEP Predict GO terms from Neighborhoods
BP GO:0097753 membrane bending IEP Predict GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Predict GO terms from Neighborhoods
CC GO:0098807 chloroplast thylakoid membrane protein complex IEP Predict GO terms from Neighborhoods
MF GO:0140414 phosphopantetheine-dependent carrier activity IEP Predict GO terms from Neighborhoods
MF GO:0140824 thioredoxin-dependent peroxiredoxin activity IEP Predict GO terms from Neighborhoods
BP GO:1900046 regulation of hemostasis IEP Predict GO terms from Neighborhoods
BP GO:1900048 positive regulation of hemostasis IEP Predict GO terms from Neighborhoods
BP GO:1901099 negative regulation of signal transduction in absence of ligand IEP Predict GO terms from Neighborhoods
BP GO:1901259 chloroplast rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901403 positive regulation of tetrapyrrole metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901465 positive regulation of tetrapyrrole biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901710 regulation of homoserine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902106 negative regulation of leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902326 positive regulation of chlorophyll biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902930 regulation of alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902932 positive regulation of alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903034 regulation of response to wounding IEP Predict GO terms from Neighborhoods
BP GO:1903036 positive regulation of response to wounding IEP Predict GO terms from Neighborhoods
BP GO:1903038 negative regulation of leukocyte cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:1903707 negative regulation of hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:1904963 regulation of phytol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1904964 positive regulation of phytol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1904965 regulation of vitamin E biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1904966 positive regulation of vitamin E biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:1990204 oxidoreductase complex IEP Predict GO terms from Neighborhoods
BP GO:2000282 regulation of cellular amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2001236 regulation of extrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001237 negative regulation of extrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001239 regulation of extrinsic apoptotic signaling pathway in absence of ligand IEP Predict GO terms from Neighborhoods
BP GO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligand IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002583 Ribosomal_S20 73 159
IPR036510 Ribosomal_S20_sf 73 174
No external refs found!