SOLTUB.AGRIA.G00000026053

Description : Choline transporter-related family protein

Gene families : OG_02_0015931 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026053
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_261

Type	GO Term	Name	Evidence	Source
BP	GO:0001558	regulation of cell growth	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005774	vacuolar membrane	None	Extended
CC	GO:0005856	cytoskeleton	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	cation transmembrane transporter activity	None	Extended
CC	GO:0009506	plasmodesma	None	Extended
CC	GO:0009524	phragmoplast	IEA	AHRD
CC	GO:0009551	secondary plasmodesma	IEA	AHRD
BP	GO:0009663	plasmodesma organization	IEA	AHRD
CC	GO:0009705	plant-type vacuole membrane	IEA	AHRD
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0010008	endosome membrane	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	IEA	AHRD
BP	GO:0010065	primary meristem tissue development	None	Extended
BP	GO:0010067	procambium histogenesis	IEA	AHRD
BP	GO:0010087	phloem or xylem histogenesis	None	Extended
BP	GO:0010088	phloem development	IEA	AHRD
BP	GO:0010496	intercellular transport	None	Extended
BP	GO:0010497	plasmodesmata-mediated intercellular transport	IEA	AHRD
BP	GO:0010817	regulation of hormone levels	None	Extended
CC	GO:0012506	vesicle membrane	None	Extended
BP	GO:0015031	protein transport	IEA	AHRD
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015101	organic cation transmembrane transporter activity	None	Extended
MF	GO:0015220	choline transmembrane transporter activity	IEA	AHRD
BP	GO:0015695	organic cation transport	None	Extended
BP	GO:0015871	choline transport	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0022604	regulation of cell morphogenesis	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030100	regulation of endocytosis	IEA	AHRD
BP	GO:0030154	cell differentiation	None	Extended
CC	GO:0030659	cytoplasmic vesicle membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031901	early endosome membrane	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032588	trans-Golgi network membrane	IEA	AHRD
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034330	cell junction organization	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045216	cell-cell junction organization	None	Extended
BP	GO:0048364	root development	IEA	AHRD
BP	GO:0048366	leaf development	IEA	AHRD
BP	GO:0048507	meristem development	None	Extended
BP	GO:0048508	embryonic meristem development	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048840	otolith development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050801	ion homeostasis	IEA	AHRD
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051510	regulation of unidimensional cell growth	IEA	AHRD
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	AHRD
BP	GO:0055088	lipid homeostasis	IEA	AHRD
BP	GO:0060627	regulation of vesicle-mediated transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090603	sieve element differentiation	IEA	AHRD
CC	GO:0097218	sieve plate	IEA	AHRD
CC	GO:0098588	bounding membrane of organelle	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:2000012	regulation of auxin polar transport	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
CC	GO:0000138	Golgi trans cisterna	IEP	Predict GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0000329	fungal-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0000810	diacylglycerol diphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0000922	spindle pole	IEP	Predict GO terms from Neighborhoods
BP	GO:0001835	blastocyst hatching	IEP	Predict GO terms from Neighborhoods
BP	GO:0001894	tissue homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0002682	regulation of immune system process	IEP	Predict GO terms from Neighborhoods
MF	GO:0003993	acid phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005096	GTPase activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005496	steroid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005768	endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005776	autophagosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005798	Golgi-associated vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0005802	trans-Golgi network	IEP	Predict GO terms from Neighborhoods
CC	GO:0005875	microtubule associated complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005935	cellular bud neck	IEP	Predict GO terms from Neighborhoods
BP	GO:0006665	sphingolipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006699	bile acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006897	endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007010	cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007026	negative regulation of microtubule depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007049	cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007639	homeostasis of number of meristem cells	IEP	Predict GO terms from Neighborhoods
MF	GO:0008047	enzyme activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008195	phosphatidate phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008206	bile acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008238	exopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0008352	katanin complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0008354	germ cell migration	IEP	Predict GO terms from Neighborhoods
CC	GO:0009514	glyoxysome	IEP	Predict GO terms from Neighborhoods
BP	GO:0009719	response to endogenous stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009720	detection of hormone stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009726	detection of endogenous stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009729	detection of brassinosteroid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009932	cell tip growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0009965	leaf morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010033	response to organic substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010068	protoderm histogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010152	pollen maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010262	somatic embryogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010393	galacturonan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010398	xylogalacturonan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010976	positive regulation of neuron projection development	IEP	Predict GO terms from Neighborhoods
CC	GO:0012505	endomembrane system	IEP	Predict GO terms from Neighborhoods
MF	GO:0015026	coreceptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015248	sterol transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015485	cholesterol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016237	lysosomal microautophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0030011	maintenance of cell polarity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030133	transport vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030135	coated vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030136	clathrin-coated vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030139	endocytic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030426	growth cone	IEP	Predict GO terms from Neighborhoods
CC	GO:0030427	site of polarized growth	IEP	Predict GO terms from Neighborhoods
CC	GO:0030496	midbody	IEP	Predict GO terms from Neighborhoods
MF	GO:0030695	GTPase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030901	midbrain development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031110	regulation of microtubule polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031111	negative regulation of microtubule polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031112	positive regulation of microtubule polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031114	regulation of microtubule depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031117	positive regulation of microtubule depolymerization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031410	cytoplasmic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031982	vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
CC	GO:0031985	Golgi cisterna	IEP	Predict GO terms from Neighborhoods
BP	GO:0032365	intracellular lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032368	regulation of lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032371	regulation of sterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032374	regulation of cholesterol transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0032541	cortical endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
MF	GO:0032934	sterol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034727	piecemeal microautophagy of the nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0035091	phosphatidylinositol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035188	hatching	IEP	Predict GO terms from Neighborhoods
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0035618	root hair	IEP	Predict GO terms from Neighborhoods
BP	GO:0035621	ER to Golgi ceramide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035627	ceramide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0036314	response to sterol	IEP	Predict GO terms from Neighborhoods
BP	GO:0036315	cellular response to sterol	IEP	Predict GO terms from Neighborhoods
BP	GO:0040014	regulation of multicellular organism growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0040015	negative regulation of multicellular organism growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0042221	response to chemical	IEP	Predict GO terms from Neighborhoods
MF	GO:0042285	xylosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042546	cell wall biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0042577	lipid phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043087	regulation of GTPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0043178	alcohol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043242	negative regulation of protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0044232	organelle membrane contact site	IEP	Predict GO terms from Neighborhoods
BP	GO:0044804	autophagy of nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0045088	regulation of innate immune response	IEP	Predict GO terms from Neighborhoods
CC	GO:0045177	apical part of cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0045488	pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045489	pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046677	response to antibiotic	IEP	Predict GO terms from Neighborhoods
BP	GO:0046839	phospholipid dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048768	root hair cell tip growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0048872	homeostasis of number of cells	IEP	Predict GO terms from Neighborhoods
BP	GO:0048873	homeostasis of number of cells within a tissue	IEP	Predict GO terms from Neighborhoods
BP	GO:0050776	regulation of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0051013	microtubule severing	IEP	Predict GO terms from Neighborhoods
BP	GO:0051336	regulation of hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070723	response to cholesterol	IEP	Predict GO terms from Neighborhoods
MF	GO:0070840	dynein complex binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070887	cellular response to chemical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071310	cellular response to organic substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071323	cellular response to chitin	IEP	Predict GO terms from Neighborhoods
BP	GO:0071397	cellular response to cholesterol	IEP	Predict GO terms from Neighborhoods
BP	GO:0071417	cellular response to organonitrogen compound	IEP	Predict GO terms from Neighborhoods
CC	GO:0071561	nucleus-vacuole junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0071684	organism emergence from protective structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0071782	endoplasmic reticulum tubular network	IEP	Predict GO terms from Neighborhoods
BP	GO:0090279	regulation of calcium ion import	IEP	Predict GO terms from Neighborhoods
BP	GO:0090558	plant epidermis development	IEP	Predict GO terms from Neighborhoods
CC	GO:0097038	perinuclear endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
CC	GO:0097708	intracellular vesicle	IEP	Predict GO terms from Neighborhoods
MF	GO:0098772	molecular function regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0098791	Golgi apparatus subcompartment	IEP	Predict GO terms from Neighborhoods
MF	GO:0106310	protein serine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0120013	lipid transfer activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0120015	sterol transfer activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900150	regulation of defense response to fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:1901699	cellular response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1901701	cellular response to oxygen-containing compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1901879	regulation of protein depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:1901880	negative regulation of protein depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:1901881	positive regulation of protein depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1905952	regulation of lipid localization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007603	Choline_transptr-like	328	671

External Links

No external refs found!

SOLTUB.AGRIA.G00000026053

Expression Profile

Co-expression Networks

Functional Annotation