Coexpression cluster: Cluster_261 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0043228 non-membrane-bounded organelle 33.33% (20/60) 1.92 0.0 6.2e-05
GO:0043232 intracellular non-membrane-bounded organelle 33.33% (20/60) 1.92 0.0 6.2e-05
GO:0006807 nitrogen compound metabolic process 60.0% (36/60) 1.1 0.0 6.3e-05
GO:0044238 primary metabolic process 65.0% (39/60) 1.03 0.0 6.3e-05
GO:0006139 nucleobase-containing compound metabolic process 35.0% (21/60) 1.79 0.0 6.7e-05
GO:0003824 catalytic activity 65.0% (39/60) 0.98 0.0 8.9e-05
GO:0140640 catalytic activity, acting on a nucleic acid 18.33% (11/60) 2.82 0.0 9.4e-05
GO:0005575 cellular_component 90.0% (54/60) 0.56 1e-06 9.8e-05
GO:0008152 metabolic process 71.67% (43/60) 0.85 1e-06 0.000107
GO:0090304 nucleic acid metabolic process 30.0% (18/60) 1.86 1e-06 0.000113
GO:1901360 organic cyclic compound metabolic process 43.33% (26/60) 1.39 1e-06 0.000116
GO:0008150 biological_process 90.0% (54/60) 0.55 1e-06 0.000119
GO:0006259 DNA metabolic process 18.33% (11/60) 2.72 1e-06 0.000123
GO:0046483 heterocycle metabolic process 38.33% (23/60) 1.54 1e-06 0.000124
GO:0140097 catalytic activity, acting on DNA 11.67% (7/60) 3.67 1e-06 0.000147
GO:0034641 cellular nitrogen compound metabolic process 41.67% (25/60) 1.61 0.0 0.000159
GO:0044237 cellular metabolic process 63.33% (38/60) 0.9 3e-06 0.000286
GO:0043570 maintenance of DNA repeat elements 5.0% (3/60) 6.76 3e-06 0.000294
GO:0071704 organic substance metabolic process 66.67% (40/60) 0.85 3e-06 0.000301
GO:0003674 molecular_function 86.67% (52/60) 0.54 5e-06 0.00047
GO:0009987 cellular process 80.0% (48/60) 0.62 8e-06 0.000648
GO:0006725 cellular aromatic compound metabolic process 38.33% (23/60) 1.35 9e-06 0.000778
GO:0140513 nuclear protein-containing complex 18.33% (11/60) 2.27 1.4e-05 0.001129
GO:0043170 macromolecule metabolic process 46.67% (28/60) 1.06 2.8e-05 0.002075
GO:0048513 animal organ development 15.0% (9/60) 2.41 4.6e-05 0.003318
GO:0006310 DNA recombination 8.33% (5/60) 3.66 4.8e-05 0.003343
GO:0044818 mitotic G2/M transition checkpoint 5.0% (3/60) 5.35 5.7e-05 0.003793
GO:0006281 DNA repair 11.67% (7/60) 2.8 6.5e-05 0.004192
GO:0006974 cellular response to DNA damage stimulus 13.33% (8/60) 2.49 8.3e-05 0.005208
GO:0048856 anatomical structure development 41.67% (25/60) 1.06 9.9e-05 0.005794
GO:0110165 cellular anatomical entity 83.33% (50/60) 0.47 9.7e-05 0.005873
GO:0016073 snRNA metabolic process 5.0% (3/60) 5.05 0.000105 0.005944
GO:1903047 mitotic cell cycle process 11.67% (7/60) 2.65 0.000125 0.006848
GO:0010972 negative regulation of G2/M transition of mitotic cell cycle 5.0% (3/60) 4.87 0.000154 0.007938
GO:1902750 negative regulation of cell cycle G2/M phase transition 5.0% (3/60) 4.87 0.000154 0.007938
GO:0044260 cellular macromolecule metabolic process 25.0% (15/60) 1.51 0.000159 0.008002
GO:0099081 supramolecular polymer 10.0% (6/60) 2.81 0.000211 0.009766
GO:0099512 supramolecular fiber 10.0% (6/60) 2.81 0.000211 0.009766
GO:0015074 DNA integration 3.33% (2/60) 6.44 0.00024 0.009875
GO:0005488 binding 73.33% (44/60) 0.55 0.000202 0.009897
GO:0000166 nucleotide binding 26.67% (16/60) 1.39 0.000237 0.009968
GO:1901265 nucleoside phosphate binding 26.67% (16/60) 1.39 0.000237 0.009968
GO:0034654 nucleobase-containing compound biosynthetic process 11.67% (7/60) 2.51 0.000221 0.009977
GO:0032991 protein-containing complex 30.0% (18/60) 1.28 0.000233 0.010292
GO:0016787 hydrolase activity 26.67% (16/60) 1.38 0.000263 0.010563
GO:0044774 mitotic DNA integrity checkpoint signaling 5.0% (3/60) 4.52 0.000311 0.011951
GO:0000439 transcription factor TFIIH core complex 3.33% (2/60) 6.26 0.00031 0.01221
GO:0008094 ATP-dependent activity, acting on DNA 6.67% (4/60) 3.55 0.000391 0.014453
GO:0004652 polynucleotide adenylyltransferase activity 3.33% (2/60) 6.1 0.00039 0.014683
GO:0022402 cell cycle process 15.0% (9/60) 1.97 0.000438 0.015834
GO:0090501 RNA phosphodiester bond hydrolysis 6.67% (4/60) 3.46 0.000485 0.016857
GO:1901363 heterocyclic compound binding 45.0% (27/60) 0.86 0.000494 0.016868
GO:0034472 snRNA 3'-end processing 3.33% (2/60) 5.96 0.000478 0.016938
GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 3.33% (2/60) 5.89 0.000525 0.017579
GO:0097159 organic cyclic compound binding 45.0% (27/60) 0.85 0.000555 0.017939
GO:0043229 intracellular organelle 61.67% (37/60) 0.63 0.000546 0.017951
GO:0005874 microtubule 8.33% (5/60) 2.88 0.000592 0.018468
GO:1902494 catalytic complex 16.67% (10/60) 1.78 0.000589 0.018684
GO:0043226 organelle 61.67% (37/60) 0.62 0.000621 0.019035
GO:0036094 small molecule binding 26.67% (16/60) 1.25 0.000722 0.021407
GO:0140098 catalytic activity, acting on RNA 10.0% (6/60) 2.48 0.000711 0.021445
GO:0000729 DNA double-strand break processing 3.33% (2/60) 5.59 0.000793 0.02315
GO:0031570 DNA integrity checkpoint signaling 5.0% (3/60) 4.01 0.000871 0.024997
GO:0099080 supramolecular complex 11.67% (7/60) 2.15 0.000974 0.027517
GO:0005741 mitochondrial outer membrane 5.0% (3/60) 3.93 0.001024 0.02807
GO:0031123 RNA 3'-end processing 5.0% (3/60) 3.93 0.001024 0.02807
GO:0043138 3'-5' DNA helicase activity 3.33% (2/60) 5.39 0.001047 0.028268
GO:0005730 nucleolus 13.33% (8/60) 1.94 0.00108 0.028316
GO:0051276 chromosome organization 8.33% (5/60) 2.69 0.001065 0.028327
GO:0060716 labyrinthine layer blood vessel development 1.67% (1/60) 9.35 0.001535 0.028925
GO:0006548 histidine catabolic process 1.67% (1/60) 9.35 0.001535 0.028925
GO:0030735 carnosine N-methyltransferase activity 1.67% (1/60) 9.35 0.001535 0.028925
GO:0035498 carnosine metabolic process 1.67% (1/60) 9.35 0.001535 0.028925
GO:0016076 snRNA catabolic process 1.67% (1/60) 9.35 0.001535 0.028925
GO:0071036 nuclear polyadenylation-dependent snoRNA catabolic process 1.67% (1/60) 9.35 0.001535 0.028925
GO:0071037 nuclear polyadenylation-dependent snRNA catabolic process 1.67% (1/60) 9.35 0.001535 0.028925
GO:0071039 nuclear polyadenylation-dependent CUT catabolic process 1.67% (1/60) 9.35 0.001535 0.028925
GO:0071040 nuclear polyadenylation-dependent antisense transcript catabolic process 1.67% (1/60) 9.35 0.001535 0.028925
GO:0071041 antisense RNA transcript catabolic process 1.67% (1/60) 9.35 0.001535 0.028925
GO:0009551 secondary plasmodesma 1.67% (1/60) 9.35 0.001535 0.028925
GO:0097218 sieve plate 1.67% (1/60) 9.35 0.001535 0.028925
GO:0019912 cyclin-dependent protein kinase activating kinase activity 1.67% (1/60) 9.35 0.001535 0.028925
GO:0042795 snRNA transcription by RNA polymerase II 1.67% (1/60) 9.35 0.001535 0.028925
GO:0071619 phosphorylation of RNA polymerase II C-terminal domain serine 2 residues 1.67% (1/60) 9.35 0.001535 0.028925
GO:0071620 phosphorylation of RNA polymerase II C-terminal domain serine 5 residues 1.67% (1/60) 9.35 0.001535 0.028925
GO:0034477 U6 snRNA 3'-end processing 1.67% (1/60) 9.35 0.001535 0.028925
GO:0016229 steroid dehydrogenase activity 3.33% (2/60) 5.3 0.001186 0.030662
GO:0016180 snRNA processing 3.33% (2/60) 5.06 0.001655 0.03087
GO:0010389 regulation of G2/M transition of mitotic cell cycle 5.0% (3/60) 3.82 0.001272 0.031952
GO:0070816 phosphorylation of RNA polymerase II C-terminal domain 3.33% (2/60) 5.26 0.001259 0.032088
GO:0017076 purine nucleotide binding 18.33% (11/60) 1.52 0.001318 0.03222
GO:0050794 regulation of cellular process 48.33% (29/60) 0.73 0.001342 0.032364
GO:0099513 polymeric cytoskeletal fiber 8.33% (5/60) 2.63 0.001308 0.032409
GO:1902749 regulation of cell cycle G2/M phase transition 5.0% (3/60) 3.77 0.001408 0.033524
GO:0016874 ligase activity 6.67% (4/60) 3.04 0.001448 0.033582
GO:0007093 mitotic cell cycle checkpoint signaling 5.0% (3/60) 3.76 0.001437 0.033756
GO:0000725 recombinational repair 5.0% (3/60) 3.74 0.001495 0.034227
GO:1901990 regulation of mitotic cell cycle phase transition 6.67% (4/60) 2.94 0.001869 0.034503
GO:0031966 mitochondrial membrane 6.67% (4/60) 2.93 0.001909 0.03489
GO:0140657 ATP-dependent activity 10.0% (6/60) 2.19 0.00201 0.036354
GO:0090305 nucleic acid phosphodiester bond hydrolysis 6.67% (4/60) 2.9 0.002076 0.036824
GO:0032502 developmental process 45.0% (27/60) 0.74 0.002071 0.037087
GO:0004540 ribonuclease activity 5.0% (3/60) 3.57 0.002119 0.037208
GO:0051128 regulation of cellular component organization 16.67% (10/60) 1.52 0.00223 0.038791
GO:0006303 double-strand break repair via nonhomologous end joining 3.33% (2/60) 4.82 0.002296 0.039559
GO:0097367 carbohydrate derivative binding 18.33% (11/60) 1.41 0.00243 0.041463
GO:0035639 purine ribonucleoside triphosphate binding 16.67% (10/60) 1.5 0.002462 0.041628
GO:0010216 maintenance of DNA methylation 3.33% (2/60) 4.76 0.002498 0.041834
GO:0006298 mismatch repair 3.33% (2/60) 4.73 0.002601 0.043171
GO:0000075 cell cycle checkpoint signaling 5.0% (3/60) 3.45 0.002668 0.04348
GO:1901991 negative regulation of mitotic cell cycle phase transition 5.0% (3/60) 3.45 0.002668 0.04348
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters 3.33% (2/60) 4.7 0.002707 0.043722
GO:0016070 RNA metabolic process 16.67% (10/60) 1.48 0.002739 0.043849
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity 1.67% (1/60) 8.35 0.003068 0.045863
GO:0102175 3-beta-hydroxysteroid dehydrogenase/C4-decarboxylase activity 1.67% (1/60) 8.35 0.003068 0.045863
GO:0102191 4alpha-carboxy-5alpha-cholesta-7,24-dien-3beta-ol dehydrogenase/C4-decarboxylase activity 1.67% (1/60) 8.35 0.003068 0.045863
GO:0004573 Glc3Man9GlcNAc2 oligosaccharide glucosidase activity 1.67% (1/60) 8.35 0.003068 0.045863
GO:0015220 choline transmembrane transporter activity 1.67% (1/60) 8.35 0.003068 0.045863
GO:0065007 biological regulation 55.0% (33/60) 0.58 0.002912 0.046205
GO:0032501 multicellular organismal process 33.33% (20/60) 0.89 0.003161 0.046867
GO:0033043 regulation of organelle organization 10.0% (6/60) 2.07 0.002982 0.04691
GO:1903046 meiotic cell cycle process 8.33% (5/60) 2.34 0.003054 0.047633
GO:0006643 membrane lipid metabolic process 5.0% (3/60) 3.34 0.003298 0.048503
GO:0070566 adenylyltransferase activity 3.33% (2/60) 4.54 0.003383 0.048959
GO:0061647 histone H3-K9 modification 3.33% (2/60) 4.54 0.003383 0.048959
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_270 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_51 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_56 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_87 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_128 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_138 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_176 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_179 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_183 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_210 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_211 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_216 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_221 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_237 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (60) (download table)

InterPro Domains

GO Terms

Family Terms