SOLTUB.AGRIA.G00000026137

Description : glycine-rich RNA-binding-like protein

Gene families : OG_02_0009984 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026137
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_268

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
CC	GO:0000314	organellar small ribosomal subunit	None	Extended
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0001101	response to acid chemical	None	Extended
CC	GO:0001650	fibrillar center	IEA	AHRD
CC	GO:0001651	dense fibrillar component	IEA	AHRD
BP	GO:0001817	regulation of cytokine production	None	Extended
BP	GO:0001819	positive regulation of cytokine production	None	Extended
BP	GO:0001889	liver development	None	Extended
BP	GO:0002237	response to molecule of bacterial origin	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	AHRD
MF	GO:0003697	single-stranded DNA binding	IEA	AHRD
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	None	Extended
MF	GO:0005102	signaling receptor binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	IEA	AHRD
MF	GO:0005509	calcium ion binding	IEA	AHRD
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005737	cytoplasm	None	Extended
CC	GO:0005763	mitochondrial small ribosomal subunit	IEA	AHRD
CC	GO:0005938	cell cortex	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006356	regulation of transcription by RNA polymerase I	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006897	endocytosis	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0007283	spermatogenesis	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEA	AHRD
BP	GO:0009414	response to water deprivation	IEA	AHRD
BP	GO:0009415	response to water	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
CC	GO:0009986	cell surface	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IEA	AHRD
BP	GO:0016556	mRNA modification	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0017148	negative regulation of translation	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031099	regeneration	None	Extended
BP	GO:0031100	animal organ regeneration	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032496	response to lipopolysaccharide	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032675	regulation of interleukin-6 production	None	Extended
BP	GO:0032680	regulation of tumor necrosis factor production	None	Extended
BP	GO:0032755	positive regulation of interleukin-6 production	IEA	AHRD
BP	GO:0032760	positive regulation of tumor necrosis factor production	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034097	response to cytokine	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034249	negative regulation of cellular amide metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035368	selenocysteine insertion sequence binding	IEA	AHRD
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
CC	GO:0035770	ribonucleoprotein granule	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEA	AHRD
MF	GO:0042134	rRNA primary transcript binding	IEA	AHRD
MF	GO:0042162	telomeric DNA binding	IEA	AHRD
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042393	histone binding	IEA	AHRD
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0042981	regulation of apoptotic process	None	Extended
BP	GO:0043066	negative regulation of apoptotic process	IEA	AHRD
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
MF	GO:0043236	laminin binding	IEA	AHRD
BP	GO:0043412	macromolecule modification	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045943	positive regulation of transcription by RNA polymerase I	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0047484	regulation of response to osmotic stress	None	Extended
MF	GO:0048027	mRNA 5'-UTR binding	IEA	AHRD
BP	GO:0048232	male gamete generation	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048732	gland development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
MF	GO:0050840	extracellular matrix binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070848	response to growth factor	None	Extended
BP	GO:0070849	response to epidermal growth factor	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071216	cellular response to biotic stimulus	None	Extended
BP	GO:0071219	cellular response to molecule of bacterial origin	None	Extended
BP	GO:0071222	cellular response to lipopolysaccharide	IEA	AHRD
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071345	cellular response to cytokine stimulus	None	Extended
BP	GO:0071363	cellular response to growth factor stimulus	None	Extended
BP	GO:0071364	cellular response to epidermal growth factor stimulus	IEA	AHRD
BP	GO:0071396	cellular response to lipid	None	Extended
BP	GO:0071495	cellular response to endogenous stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0097421	liver regeneration	IEA	AHRD
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140747	regulation of ncRNA transcription	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1900865	chloroplast RNA modification	None	Extended
BP	GO:1900871	chloroplast mRNA modification	IEA	AHRD
BP	GO:1901000	regulation of response to salt stress	None	Extended
BP	GO:1901002	positive regulation of response to salt stress	IEA	AHRD
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended
BP	GO:1901836	regulation of transcription of nucleolar large rRNA by RNA polymerase I	None	Extended
BP	GO:1901838	positive regulation of transcription of nucleolar large rRNA by RNA polymerase I	IEA	AHRD
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903555	regulation of tumor necrosis factor superfamily cytokine production	None	Extended
BP	GO:1903557	positive regulation of tumor necrosis factor superfamily cytokine production	None	Extended
MF	GO:1990631	ErbB-4 class receptor binding	IEA	AHRD
BP	GO:1990823	response to leukemia inhibitory factor	None	Extended
BP	GO:1990830	cellular response to leukemia inhibitory factor	IEA	AHRD
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000232	regulation of rRNA processing	IEA	AHRD
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003730	mRNA 3'-UTR binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004601	peroxidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005778	peroxisomal membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006379	mRNA cleavage	IEP	Predict GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007029	endoplasmic reticulum organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008936	nicotinamidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009165	nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009237	siderophore metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009809	lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010053	root epidermal cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016209	antioxidant activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016320	endoplasmic reticulum membrane fusion	IEP	Predict GO terms from Neighborhoods
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016688	L-ascorbate peroxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predict GO terms from Neighborhoods
BP	GO:0016999	antibiotic metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0017000	antibiotic biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019674	NAD metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019748	secondary metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030029	actin filament-based process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030036	actin cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031437	regulation of mRNA cleavage	IEP	Predict GO terms from Neighborhoods
BP	GO:0031439	positive regulation of mRNA cleavage	IEP	Predict GO terms from Neighborhoods
BP	GO:0031440	regulation of mRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031442	positive regulation of mRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031903	microbody membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0034451	centriolar satellite	IEP	Predict GO terms from Neighborhoods
BP	GO:0034599	cellular response to oxidative stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0035925	mRNA 3'-UTR AU-rich region binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0042382	paraspeckles	IEP	Predict GO terms from Neighborhoods
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042826	histone deacetylase binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0046409	p-coumarate 3-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048284	organelle fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0050684	regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0050685	positive regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0051262	protein tetramerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051290	protein heterotetramerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051291	protein heterooligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0061025	membrane fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090158	endoplasmic reticulum membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090174	organelle membrane fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0098787	mRNA cleavage involved in mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0098789	pre-mRNA cleavage required for polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0098869	cellular oxidant detoxification	IEP	Predict GO terms from Neighborhoods
BP	GO:0110104	mRNA alternative polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900363	regulation of mRNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900365	positive regulation of mRNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901532	regulation of hematopoietic progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901534	positive regulation of hematopoietic progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903313	positive regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905456	regulation of lymphoid progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905458	positive regulation of lymphoid progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1990120	messenger ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1990748	cellular detoxification	IEP	Predict GO terms from Neighborhoods
BP	GO:2000736	regulation of stem cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000738	positive regulation of stem cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000973	regulation of pro-B cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000975	positive regulation of pro-B cell differentiation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR035979	RBD_domain_sf	33	149
IPR000504	RRM_dom	48	114

External Links

No external refs found!

SOLTUB.AGRIA.G00000026137

Expression Profile

Co-expression Networks

Functional Annotation