SOLTUB.AGRIA.G00000002735


Description : Ubiquitin-40S ribosomal protein S27a-like protein protein


Gene families : OG_02_0001192 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002735
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_162


Type GO Term Name Evidence Source
BP GO:0002181 cytoplasmic translation IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0003735 structural constituent of ribosome IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005789 endoplasmic reticulum membrane IEA AHRD
CC GO:0005794 Golgi apparatus IEA AHRD
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
CC GO:0010008 endosome membrane IEA AHRD
BP GO:0016567 protein ubiquitination IEA AHRD
CC GO:0022627 cytosolic small ribosomal subunit IEA AHRD
CC GO:0030666 endocytic vesicle membrane IEA AHRD
MF GO:0031386 protein tag IEA AHRD
MF GO:0031625 ubiquitin protein ligase binding IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEP Predict GO terms from Neighborhoods
BP GO:0000028 ribosomal small subunit assembly IEP Predict GO terms from Neighborhoods
MF GO:0000049 tRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0000243 commitment complex IEP Predict GO terms from Neighborhoods
BP GO:0000245 spliceosomal complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000387 spliceosomal snRNP assembly IEP Predict GO terms from Neighborhoods
BP GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000470 maturation of LSU-rRNA IEP Predict GO terms from Neighborhoods
MF GO:0000822 inositol hexakisphosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0001775 cell activation IEP Predict GO terms from Neighborhoods
BP GO:0001889 liver development IEP Predict GO terms from Neighborhoods
BP GO:0001906 cell killing IEP Predict GO terms from Neighborhoods
BP GO:0002262 myeloid cell homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0002376 immune system process IEP Predict GO terms from Neighborhoods
BP GO:0002521 leukocyte differentiation IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0004845 uracil phosphoribosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004849 uridine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005539 glycosaminoglycan binding IEP Predict GO terms from Neighborhoods
CC GO:0005618 cell wall IEP Predict GO terms from Neighborhoods
CC GO:0005682 U5 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005687 U4 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005689 U12-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005774 vacuolar membrane IEP Predict GO terms from Neighborhoods
CC GO:0005783 endoplasmic reticulum IEP Predict GO terms from Neighborhoods
CC GO:0005791 rough endoplasmic reticulum IEP Predict GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Predict GO terms from Neighborhoods
CC GO:0005854 nascent polypeptide-associated complex IEP Predict GO terms from Neighborhoods
CC GO:0005886 plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006222 UMP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006241 CTP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006366 transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006407 rRNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006448 regulation of translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0007411 axon guidance IEP Predict GO terms from Neighborhoods
BP GO:0007631 feeding behavior IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008201 heparin binding IEP Predict GO terms from Neighborhoods
BP GO:0008655 pyrimidine-containing compound salvage IEP Predict GO terms from Neighborhoods
BP GO:0009116 nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009163 nucleoside biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009174 pyrimidine ribonucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0009507 chloroplast IEP Predict GO terms from Neighborhoods
BP GO:0009792 embryo development ending in birth or egg hatching IEP Predict GO terms from Neighborhoods
BP GO:0009955 adaxial/abaxial pattern specification IEP Predict GO terms from Neighborhoods
BP GO:0009965 leaf morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010138 pyrimidine ribonucleotide salvage IEP Predict GO terms from Neighborhoods
BP GO:0010458 exit from mitosis IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
CC GO:0014069 postsynaptic density IEP Predict GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0019206 nucleoside kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0019730 antimicrobial humoral response IEP Predict GO terms from Neighborhoods
MF GO:0019838 growth factor binding IEP Predict GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0021545 cranial nerve development IEP Predict GO terms from Neighborhoods
BP GO:0021554 optic nerve development IEP Predict GO terms from Neighborhoods
BP GO:0021675 nerve development IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0022625 cytosolic large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0030098 lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030217 T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030218 erythrocyte differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030312 external encapsulating structure IEP Predict GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
CC GO:0030687 preribosome, large subunit precursor IEP Predict GO terms from Neighborhoods
BP GO:0031099 regeneration IEP Predict GO terms from Neighborhoods
BP GO:0031100 animal organ regeneration IEP Predict GO terms from Neighborhoods
BP GO:0031290 retinal ganglion cell axon guidance IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
BP GO:0031640 killing of cells of another organism IEP Predict GO terms from Neighborhoods
BP GO:0032262 pyrimidine nucleotide salvage IEP Predict GO terms from Neighborhoods
BP GO:0032502 developmental process IEP Predict GO terms from Neighborhoods
BP GO:0032950 regulation of beta-glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032951 regulation of beta-glucan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0033119 negative regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0034063 stress granule assembly IEP Predict GO terms from Neighborhoods
BP GO:0034101 erythrocyte homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0034198 cellular response to amino acid starvation IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0034709 methylosome IEP Predict GO terms from Neighborhoods
CC GO:0034715 pICln-Sm protein complex IEP Predict GO terms from Neighborhoods
CC GO:0034719 SMN-Sm protein complex IEP Predict GO terms from Neighborhoods
MF GO:0035368 selenocysteine insertion sequence binding IEP Predict GO terms from Neighborhoods
BP GO:0042110 T cell activation IEP Predict GO terms from Neighborhoods
CC GO:0042788 polysomal ribosome IEP Predict GO terms from Neighborhoods
BP GO:0043009 chordate embryonic development IEP Predict GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Predict GO terms from Neighborhoods
BP GO:0043097 pyrimidine nucleoside salvage IEP Predict GO terms from Neighborhoods
BP GO:0043173 nucleotide salvage IEP Predict GO terms from Neighborhoods
BP GO:0043174 nucleoside salvage IEP Predict GO terms from Neighborhoods
CC GO:0043186 P granule IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0044206 UMP salvage IEP Predict GO terms from Neighborhoods
BP GO:0044211 CTP salvage IEP Predict GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0045321 leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0045901 positive regulation of translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0046036 CTP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046049 UMP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046112 nucleobase biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046134 pyrimidine nucleoside biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0046631 alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0046632 alpha-beta T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0046649 lymphocyte activation IEP Predict GO terms from Neighborhoods
MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
BP GO:0048513 animal organ development IEP Predict GO terms from Neighborhoods
BP GO:0048678 response to axon injury IEP Predict GO terms from Neighborhoods
BP GO:0048732 gland development IEP Predict GO terms from Neighborhoods
BP GO:0048872 homeostasis of number of cells IEP Predict GO terms from Neighborhoods
BP GO:0050804 modulation of chemical synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0051029 rRNA transport IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0055105 ubiquitin-protein transferase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0055106 ubiquitin-protein transferase regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0060041 retina development in camera-type eye IEP Predict GO terms from Neighborhoods
BP GO:0060255 regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide IEP Predict GO terms from Neighborhoods
MF GO:0070181 small ribosomal subunit rRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0070990 snRNP binding IEP Predict GO terms from Neighborhoods
CC GO:0071004 U2-type prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071007 U2-type catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071010 prespliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071493 cellular response to UV-B IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0080090 regulation of primary metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0097064 ncRNA export from nucleus IEP Predict GO terms from Neighborhoods
MF GO:0097371 MDM2/MDM4 family protein binding IEP Predict GO terms from Neighborhoods
BP GO:0097421 liver regeneration IEP Predict GO terms from Neighborhoods
BP GO:0097485 neuron projection guidance IEP Predict GO terms from Neighborhoods
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0098552 side of membrane IEP Predict GO terms from Neighborhoods
CC GO:0098554 cytoplasmic side of endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0098562 cytoplasmic side of membrane IEP Predict GO terms from Neighborhoods
CC GO:0098793 presynapse IEP Predict GO terms from Neighborhoods
CC GO:0098978 glutamatergic synapse IEP Predict GO terms from Neighborhoods
BP GO:0099171 presynaptic modulation of chemical synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0099177 regulation of trans-synaptic signaling IEP Predict GO terms from Neighborhoods
BP GO:0099547 regulation of translation at synapse, modulating synaptic transmission IEP Predict GO terms from Neighborhoods
CC GO:0099572 postsynaptic specialization IEP Predict GO terms from Neighborhoods
BP GO:0099577 regulation of translation at presynapse, modulating synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0140243 regulation of translation at synapse IEP Predict GO terms from Neighborhoods
BP GO:0140244 regulation of translation at presynapse IEP Predict GO terms from Neighborhoods
MF GO:1901681 sulfur compound binding IEP Predict GO terms from Neighborhoods
BP GO:1901798 positive regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1903131 mononuclear cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1904569 regulation of selenocysteine incorporation IEP Predict GO terms from Neighborhoods
BP GO:1904571 positive regulation of selenocysteine incorporation IEP Predict GO terms from Neighborhoods
BP GO:1905392 plant organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:1990089 response to nerve growth factor IEP Predict GO terms from Neighborhoods
BP GO:1990090 cellular response to nerve growth factor stimulus IEP Predict GO terms from Neighborhoods
BP GO:1990145 maintenance of translational fidelity IEP Predict GO terms from Neighborhoods
MF GO:1990446 U1 snRNP binding IEP Predict GO terms from Neighborhoods
BP GO:1990928 response to amino acid starvation IEP Predict GO terms from Neighborhoods
MF GO:1990932 5.8S rRNA binding IEP Predict GO terms from Neighborhoods
MF GO:1990948 ubiquitin ligase inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2001006 regulation of cellulose biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 74
IPR011332 Ribosomal_zn-bd 100 153
IPR029071 Ubiquitin-like_domsf 1 93
IPR002906 Ribosomal_S27a 102 147
No external refs found!