SOLTUB.AGRIA.G00000026547

Description : Flowering time control protein fca

Gene families : OG_02_0006462 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026547
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_263

Type	GO Term	Name	Evidence	Source
BP	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0001701	in utero embryonic development	IEA	AHRD
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003727	single-stranded RNA binding	IEA	AHRD
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005681	spliceosomal complex	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006376	mRNA splice site selection	IEA	AHRD
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	IEA	AHRD
BP	GO:0006417	regulation of translation	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007276	gamete generation	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008219	cell death	None	Extended
BP	GO:0008361	regulation of cell size	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009626	plant-type hypersensitive response	IEA	AHRD
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009792	embryo development ending in birth or egg hatching	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009909	regulation of flower development	IEA	AHRD
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009967	positive regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0012501	programmed cell death	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0030154	cell differentiation	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031644	regulation of nervous system process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032535	regulation of cellular component size	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033119	negative regulation of RNA splicing	None	Extended
BP	GO:0033120	positive regulation of RNA splicing	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034050	programmed cell death induced by symbiont	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
MF	GO:0036002	pre-mRNA binding	IEA	AHRD
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0040034	regulation of development, heterochronic	None	Extended
BP	GO:0042391	regulation of membrane potential	None	Extended
BP	GO:0043009	chordate embryonic development	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043484	regulation of RNA splicing	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044057	regulation of system process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0044403	biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	None	Extended
BP	GO:0048025	negative regulation of mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0048026	positive regulation of mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0048506	regulation of timing of meristematic phase transition	None	Extended
BP	GO:0048509	regulation of meristem development	None	Extended
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050684	regulation of mRNA processing	None	Extended
BP	GO:0050685	positive regulation of mRNA processing	None	Extended
BP	GO:0050686	negative regulation of mRNA processing	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050804	modulation of chemical synaptic transmission	None	Extended
BP	GO:0050805	negative regulation of synaptic transmission	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051702	biological process involved in interaction with symbiont	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080113	regulation of seed growth	IEA	AHRD
BP	GO:0080151	positive regulation of salicylic acid mediated signaling pathway	IEA	AHRD
BP	GO:0090066	regulation of anatomical structure size	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090394	negative regulation of excitatory postsynaptic potential	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:0098815	modulation of excitatory postsynaptic potential	None	Extended
BP	GO:0099177	regulation of trans-synaptic signaling	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1902866	regulation of retina development in camera-type eye	IEA	AHRD
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
BP	GO:1903312	negative regulation of mRNA metabolic process	None	Extended
BP	GO:1903313	positive regulation of mRNA metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000028	regulation of photoperiodism, flowering	IEA	AHRD
BP	GO:2000031	regulation of salicylic acid mediated signaling pathway	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000118	histone deacetylase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000782	telomere cap complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000783	nuclear telomere cap complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000812	Swr1 complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004729	oxygen-dependent protoporphyrinogen oxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005200	structural constituent of cytoskeleton	IEP	Predict GO terms from Neighborhoods
CC	GO:0005743	mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005856	cytoskeleton	IEP	Predict GO terms from Neighborhoods
CC	GO:0005968	Rab-protein geranylgeranyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006643	membrane lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006665	sphingolipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006782	protoporphyrinogen IX biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006810	transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009453	energy taxis	IEP	Predict GO terms from Neighborhoods
CC	GO:0009528	plastid inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009706	chloroplast inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009894	regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009910	negative regulation of flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010257	NADH dehydrogenase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010506	regulation of autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010507	negative regulation of autophagy	IEP	Predict GO terms from Neighborhoods
CC	GO:0015629	actin cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0015850	organic hydroxy compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015918	sterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015994	chlorophyll metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0015995	chlorophyll biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016125	sterol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0018195	peptidyl-arginine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0023052	signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0030029	actin filament-based process	IEP	Predict GO terms from Neighborhoods
CC	GO:0030139	endocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0030435	sporulation resulting in formation of a cellular spore	IEP	Predict GO terms from Neighborhoods
MF	GO:0030695	GTPase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030961	peptidyl-arginine hydroxylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031154	culmination involved in sorocarp development	IEP	Predict GO terms from Neighborhoods
CC	GO:0031252	cell leading edge	IEP	Predict GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031312	extrinsic component of organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031314	extrinsic component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031329	regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031330	negative regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031491	nucleosome binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031976	plastid thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0032204	regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032206	positive regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032210	regulation of telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0032365	intracellular lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0032451	demethylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0032452	histone demethylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0032453	histone H3-methyl-lysine-4 demethylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032981	mitochondrial respiratory chain complex I assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033108	mitochondrial respiratory chain complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0042162	telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042331	phototaxis	IEP	Predict GO terms from Neighborhoods
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043462	regulation of ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043486	histone exchange	IEP	Predict GO terms from Neighborhoods
CC	GO:0044815	DNA packaging complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0045335	phagocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0046501	protoporphyrinogen IX metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051095	regulation of helicase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0051972	regulation of telomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0070818	protoporphyrinogen oxidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0071944	cell periphery	IEP	Predict GO terms from Neighborhoods
CC	GO:0097346	INO80-type complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098827	endoplasmic reticulum subcompartment	IEP	Predict GO terms from Neighborhoods
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0099120	socially cooperative development	IEP	Predict GO terms from Neighborhoods
MF	GO:0140457	protein demethylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901800	positive regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903052	positive regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904356	regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
CC	GO:1904949	ATPase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000278	regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000279	negative regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000539	regulation of protein geranylgeranylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000541	positive regulation of protein geranylgeranylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000573	positive regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001252	positive regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR035979	RBD_domain_sf	192	280
IPR001202	WW_dom	352	378
IPR036020	WW_dom_sf	353	385
IPR000504	RRM_dom	101	167
IPR000504	RRM_dom	195	258
IPR035979	RBD_domain_sf	46	178

External Links

No external refs found!

SOLTUB.AGRIA.G00000026547

Expression Profile

Co-expression Networks

Functional Annotation