SOLTUB.AGRIA.G00000026612

Description : Light harvesting-like protein 3

Gene families : OG_02_0022992 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026612
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_207

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009503	thylakoid light-harvesting complex	IEA	AHRD
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010380	regulation of chlorophyll biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0015979	photosynthesis	IEA	AHRD
CC	GO:0016021	integral component of membrane	IEA	AHRD
MF	GO:0016168	chlorophyll binding	IEA	AHRD
BP	GO:0018298	obsolete protein-chromophore linkage	IEA	AHRD
BP	GO:0019216	regulation of lipid metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019747	regulation of isoprenoid metabolic process	None	Extended
MF	GO:0019899	enzyme binding	IEA	AHRD
CC	GO:0030076	light-harvesting complex	None	Extended
BP	GO:0030656	regulation of vitamin metabolic process	None	Extended
MF	GO:0030674	protein-macromolecule adaptor activity	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
MF	GO:0043495	protein-membrane adaptor activity	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0045828	positive regulation of isoprenoid metabolic process	None	Extended
BP	GO:0045834	positive regulation of lipid metabolic process	None	Extended
BP	GO:0046136	positive regulation of vitamin metabolic process	None	Extended
BP	GO:0046889	positive regulation of lipid biosynthetic process	None	Extended
BP	GO:0046890	regulation of lipid biosynthetic process	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0062012	regulation of small molecule metabolic process	None	Extended
BP	GO:0062013	positive regulation of small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090056	regulation of chlorophyll metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098807	chloroplast thylakoid membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901401	regulation of tetrapyrrole metabolic process	None	Extended
BP	GO:1901403	positive regulation of tetrapyrrole metabolic process	None	Extended
BP	GO:1901463	regulation of tetrapyrrole biosynthetic process	None	Extended
BP	GO:1901465	positive regulation of tetrapyrrole biosynthetic process	None	Extended
BP	GO:1902326	positive regulation of chlorophyll biosynthetic process	IEA	AHRD
BP	GO:1902930	regulation of alcohol biosynthetic process	None	Extended
BP	GO:1902932	positive regulation of alcohol biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1904963	regulation of phytol biosynthetic process	None	Extended
BP	GO:1904964	positive regulation of phytol biosynthetic process	IEA	AHRD
BP	GO:1904965	regulation of vitamin E biosynthetic process	None	Extended
BP	GO:1904966	positive regulation of vitamin E biosynthetic process	IEA	AHRD
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000095	S-adenosyl-L-methionine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000302	response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
BP	GO:0000304	response to singlet oxygen	IEP	Predict GO terms from Neighborhoods
BP	GO:0000910	cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0000917	division septum assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0000935	division septum	IEP	Predict GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004462	lactoylglutathione lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004784	superoxide dismutase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005622	intracellular anatomical structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0006089	lactate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006353	DNA-templated transcription termination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006801	superoxide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006979	response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009295	nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009314	response to radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009416	response to light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009438	methylglyoxal metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009528	plastid inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009533	chloroplast stromal thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009534	chloroplast thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009543	chloroplast thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009628	response to abiotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009637	response to blue light	IEP	Predict GO terms from Neighborhoods
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009658	chloroplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009704	de-etiolation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009706	chloroplast inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009806	lignan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009807	lignan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009902	chloroplast relocation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0010020	chloroplast fission	IEP	Predict GO terms from Neighborhoods
BP	GO:0010038	response to metal ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010193	response to ozone	IEP	Predict GO terms from Neighborhoods
BP	GO:0010206	photosystem II repair	IEP	Predict GO terms from Neighborhoods
CC	GO:0010319	stromule	IEP	Predict GO terms from Neighborhoods
MF	GO:0015035	protein-disulfide reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015693	magnesium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015695	organic cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015805	S-adenosyl-L-methionine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015995	chlorophyll biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0016151	nickel cation binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0016209	antioxidant activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	IEP	Predict GO terms from Neighborhoods
BP	GO:0019253	reductive pentose-phosphate cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0019430	removal of superoxide radicals	IEP	Predict GO terms from Neighborhoods
BP	GO:0019685	photosynthesis, dark reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0019750	chloroplast localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0019863	IgE binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019865	immunoglobulin binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0019866	organelle inner membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0019904	protein domain specific binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030091	protein repair	IEP	Predict GO terms from Neighborhoods
MF	GO:0030337	DNA polymerase processivity factor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030428	cell septum	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031967	organelle envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031969	chloroplast membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031975	envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031976	plastid thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0031978	plastid thylakoid lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032506	cytokinetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0042170	plastid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042182	ketone catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042644	chloroplast nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042646	plastid nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0043093	FtsZ-dependent cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0043572	plastid fission	IEP	Predict GO terms from Neighborhoods
MF	GO:0043621	protein self-association	IEP	Predict GO terms from Neighborhoods
MF	GO:0043891	glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Predict GO terms from Neighborhoods
BP	GO:0045036	protein targeting to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0045037	protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0046185	aldehyde catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046686	response to cadmium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0046688	response to copper ion	IEP	Predict GO terms from Neighborhoods
MF	GO:0047100	glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048285	organelle fission	IEP	Predict GO terms from Neighborhoods
BP	GO:0051258	protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051596	methylglyoxal catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051640	organelle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051644	plastid localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051656	establishment of organelle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051667	establishment of plastid localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0061727	methylglyoxal catabolic process to lactate	IEP	Predict GO terms from Neighborhoods
MF	GO:0070181	small ribosomal subunit rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071452	cellular response to singlet oxygen	IEP	Predict GO terms from Neighborhoods
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0072598	protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0090529	cell septum assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0097718	disordered domain specific binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0098754	detoxification	IEP	Predict GO terms from Neighborhoods
BP	GO:0098869	cellular oxidant detoxification	IEP	Predict GO terms from Neighborhoods
MF	GO:0102911	(-)-secoisolariciresinol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900262	regulation of DNA-directed DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900264	positive regulation of DNA-directed DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901962	S-adenosyl-L-methionine transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903533	regulation of protein targeting	IEP	Predict GO terms from Neighborhoods
BP	GO:1904215	regulation of protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:1904216	positive regulation of protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:1990748	cellular detoxification	IEP	Predict GO terms from Neighborhoods
BP	GO:2000573	positive regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

External Links

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SOLTUB.AGRIA.G00000026612

Expression Profile

Co-expression Networks

Functional Annotation