SOLTUB.AGRIA.G00000002808


Description : DNA excision repair protein ERCC-6-like protein


Gene families : OG_02_0007576 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002808
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_100


Type GO Term Name Evidence Source
BP GO:0000303 response to superoxide IEA AHRD
MF GO:0003677 DNA binding IEA AHRD
MF GO:0004386 helicase activity IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005694 chromosome IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005856 cytoskeleton IEA AHRD
BP GO:0006283 transcription-coupled nucleotide-excision repair IEA AHRD
BP GO:0006290 pyrimidine dimer repair IEA AHRD
BP GO:0006362 transcription elongation by RNA polymerase I IEA AHRD
BP GO:0007254 JNK cascade IEA AHRD
BP GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage IEA AHRD
BP GO:0009636 response to toxic substance IEA AHRD
BP GO:0010165 response to X-ray IEA AHRD
BP GO:0010224 response to UV-B IEA AHRD
BP GO:0010332 response to gamma radiation IEA AHRD
BP GO:0010605 negative regulation of macromolecule metabolic process IEA AHRD
BP GO:0010965 regulation of mitotic sister chromatid separation IEA AHRD
MF GO:0015616 DNA translocase activity IEA AHRD
MF GO:0016787 hydrolase activity IEA AHRD
MF GO:0019899 enzyme binding IEA AHRD
BP GO:0030182 neuron differentiation IEA AHRD
BP GO:0032784 regulation of DNA-templated transcription elongation IEA AHRD
CC GO:0032991 protein-containing complex IEA AHRD
BP GO:0035264 multicellular organism growth IEA AHRD
BP GO:0045494 photoreceptor cell maintenance IEA AHRD
BP GO:0045739 positive regulation of DNA repair IEA AHRD
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEA AHRD
BP GO:0045951 positive regulation of mitotic recombination IEA AHRD
BP GO:0046686 response to cadmium ion IEA AHRD
BP GO:0060261 positive regulation of transcription initiation by RNA polymerase II IEA AHRD
BP GO:2000014 regulation of endosperm development IEA AHRD
BP GO:2000779 regulation of double-strand break repair IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Predict GO terms from Neighborhoods
MF GO:0000217 DNA secondary structure binding IEP Predict GO terms from Neighborhoods
BP GO:0000281 mitotic cytokinesis IEP Predict GO terms from Neighborhoods
CC GO:0000775 chromosome, centromeric region IEP Predict GO terms from Neighborhoods
CC GO:0000779 condensed chromosome, centromeric region IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
CC GO:0000796 condensin complex IEP Predict GO terms from Neighborhoods
BP GO:0000910 cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0000911 cytokinesis by cell plate formation IEP Predict GO terms from Neighborhoods
CC GO:0000922 spindle pole IEP Predict GO terms from Neighborhoods
MF GO:0003680 minor groove of adenine-thymine-rich DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003682 chromatin binding IEP Predict GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003697 single-stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003774 cytoskeletal motor activity IEP Predict GO terms from Neighborhoods
MF GO:0003777 microtubule motor activity IEP Predict GO terms from Neighborhoods
CC GO:0005813 centrosome IEP Predict GO terms from Neighborhoods
CC GO:0005871 kinesin complex IEP Predict GO terms from Neighborhoods
CC GO:0005875 microtubule associated complex IEP Predict GO terms from Neighborhoods
CC GO:0005929 cilium IEP Predict GO terms from Neighborhoods
BP GO:0006302 double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:0006479 protein methylation IEP Predict GO terms from Neighborhoods
BP GO:0007018 microtubule-based movement IEP Predict GO terms from Neighborhoods
BP GO:0007051 spindle organization IEP Predict GO terms from Neighborhoods
BP GO:0007052 mitotic spindle organization IEP Predict GO terms from Neighborhoods
BP GO:0007059 chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0007076 mitotic chromosome condensation IEP Predict GO terms from Neighborhoods
BP GO:0007112 male meiosis cytokinesis IEP Predict GO terms from Neighborhoods
MF GO:0008017 microtubule binding IEP Predict GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0008213 protein alkylation IEP Predict GO terms from Neighborhoods
MF GO:0008276 protein methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008327 methyl-CpG binding IEP Predict GO terms from Neighborhoods
MF GO:0008574 plus-end-directed microtubule motor activity IEP Predict GO terms from Neighborhoods
CC GO:0009524 phragmoplast IEP Predict GO terms from Neighborhoods
BP GO:0010032 meiotic chromosome condensation IEP Predict GO terms from Neighborhoods
BP GO:0010216 maintenance of DNA methylation IEP Predict GO terms from Neighborhoods
MF GO:0010385 double-stranded methylated DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0010428 methyl-CpNpG binding IEP Predict GO terms from Neighborhoods
MF GO:0010429 methyl-CpNpN binding IEP Predict GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0010970 transport along microtubule IEP Predict GO terms from Neighborhoods
MF GO:0016278 lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0016458 obsolete gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0016571 histone methylation IEP Predict GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Predict GO terms from Neighborhoods
BP GO:0018022 peptidyl-lysine methylation IEP Predict GO terms from Neighborhoods
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0022611 dormancy process IEP Predict GO terms from Neighborhoods
BP GO:0030261 chromosome condensation IEP Predict GO terms from Neighborhoods
CC GO:0030425 dendrite IEP Predict GO terms from Neighborhoods
BP GO:0030705 cytoskeleton-dependent intracellular transport IEP Predict GO terms from Neighborhoods
CC GO:0030993 axonemal heterotrimeric kinesin-II complex IEP Predict GO terms from Neighborhoods
BP GO:0031344 regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0031345 negative regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0031346 positive regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0031503 protein-containing complex localization IEP Predict GO terms from Neighborhoods
CC GO:0031981 nuclear lumen IEP Predict GO terms from Neighborhoods
CC GO:0032153 cell division site IEP Predict GO terms from Neighborhoods
BP GO:0033206 meiotic cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0034502 protein localization to chromosome IEP Predict GO terms from Neighborhoods
BP GO:0034968 histone lysine methylation IEP Predict GO terms from Neighborhoods
BP GO:0035720 intraciliary anterograde transport IEP Predict GO terms from Neighborhoods
CC GO:0036064 ciliary basal body IEP Predict GO terms from Neighborhoods
BP GO:0040029 epigenetic regulation of gene expression IEP Predict GO terms from Neighborhoods
MF GO:0042054 histone methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0042073 intraciliary transport IEP Predict GO terms from Neighborhoods
CC GO:0043025 neuronal cell body IEP Predict GO terms from Neighborhoods
BP GO:0043053 dauer entry IEP Predict GO terms from Neighborhoods
BP GO:0044089 positive regulation of cellular component biogenesis IEP Predict GO terms from Neighborhoods
CC GO:0044297 cell body IEP Predict GO terms from Neighborhoods
CC GO:0044815 DNA packaging complex IEP Predict GO terms from Neighborhoods
BP GO:0045132 meiotic chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0045724 positive regulation of cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:0046626 regulation of insulin receptor signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0046974 histone methyltransferase activity (H3-K9 specific) IEP Predict GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0051225 spindle assembly IEP Predict GO terms from Neighborhoods
BP GO:0051299 centrosome separation IEP Predict GO terms from Neighborhoods
BP GO:0051383 kinetochore organization IEP Predict GO terms from Neighborhoods
BP GO:0051567 histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051641 cellular localization IEP Predict GO terms from Neighborhoods
BP GO:0051704 obsolete multi-organism process IEP Predict GO terms from Neighborhoods
BP GO:0055046 microgametogenesis IEP Predict GO terms from Neighborhoods
BP GO:0055115 entry into diapause IEP Predict GO terms from Neighborhoods
BP GO:0060491 regulation of cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0061062 regulation of nematode larval development IEP Predict GO terms from Neighborhoods
BP GO:0061063 positive regulation of nematode larval development IEP Predict GO terms from Neighborhoods
BP GO:0061065 regulation of dauer larval development IEP Predict GO terms from Neighborhoods
BP GO:0061066 positive regulation of dauer larval development IEP Predict GO terms from Neighborhoods
BP GO:0061640 cytoskeleton-dependent cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0061647 histone H3-K9 modification IEP Predict GO terms from Neighborhoods
MF GO:0061775 cohesin loading activity IEP Predict GO terms from Neighborhoods
MF GO:0061776 topological DNA co-entrapment activity IEP Predict GO terms from Neighborhoods
BP GO:0061780 mitotic cohesin loading IEP Predict GO terms from Neighborhoods
BP GO:0062022 mitotic cohesin ssDNA (lagging strand) loading IEP Predict GO terms from Neighborhoods
BP GO:0070058 tRNA gene clustering IEP Predict GO terms from Neighborhoods
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0070550 rDNA chromatin condensation IEP Predict GO terms from Neighborhoods
BP GO:0071168 protein localization to chromatin IEP Predict GO terms from Neighborhoods
BP GO:0071921 cohesin loading IEP Predict GO terms from Neighborhoods
BP GO:0080175 phragmoplast microtubule organization IEP Predict GO terms from Neighborhoods
BP GO:0090307 mitotic spindle assembly IEP Predict GO terms from Neighborhoods
CC GO:0097730 non-motile cilium IEP Predict GO terms from Neighborhoods
CC GO:0098687 chromosomal region IEP Predict GO terms from Neighborhoods
BP GO:0098813 nuclear chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0099111 microtubule-based transport IEP Predict GO terms from Neighborhoods
BP GO:0120032 regulation of plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0120033 negative regulation of plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0120034 positive regulation of plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0120035 regulation of plasma membrane bounded cell projection organization IEP Predict GO terms from Neighborhoods
MF GO:0140666 annealing activity IEP Predict GO terms from Neighborhoods
BP GO:1902017 regulation of cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:1902018 negative regulation of cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:1902115 regulation of organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1902116 negative regulation of organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1902117 positive regulation of organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1902850 microtubule cytoskeleton organization involved in mitosis IEP Predict GO terms from Neighborhoods
BP GO:1902855 regulation of non-motile cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:1902856 negative regulation of non-motile cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:1902857 positive regulation of non-motile cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:1903046 meiotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Predict GO terms from Neighborhoods
MF GO:1990814 DNA/DNA annealing activity IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000330 SNF2_N 519 806
IPR001650 Helicase_C 858 970
IPR027417 P-loop_NTPase 754 1038
IPR027417 P-loop_NTPase 494 739
No external refs found!