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  5. SOLTUB.AGRIA.G00000027390

SOLTUB.AGRIA.G00000027390


Description : Aladin


Gene families : OG_02_0016051 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000027390
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_238


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA AHRD
CC GO:0005643 nuclear pore IEA AHRD
CC GO:0005783 endoplasmic reticulum IEA AHRD
BP GO:0006913 nucleocytoplasmic transport IEA AHRD
BP GO:0015031 protein transport IEA AHRD
CC GO:0015630 microtubule cytoskeleton IEA AHRD
BP GO:0051028 mRNA transport IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0000154 rRNA modification IEP Predict GO terms from Neighborhoods
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
CC GO:0000786 nucleosome IEP Predict GO terms from Neighborhoods
MF GO:0001054 RNA polymerase I activity IEP Predict GO terms from Neighborhoods
MF GO:0001056 RNA polymerase III activity IEP Predict GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0001708 cell fate specification IEP Predict GO terms from Neighborhoods
BP GO:0001731 formation of translation preinitiation complex IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003824 catalytic activity IEP Predict GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:0004081 bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity IEP Predict GO terms from Neighborhoods
MF GO:0004407 histone deacetylase activity IEP Predict GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004820 glycine-tRNA ligase activity IEP Predict GO terms from Neighborhoods
CC GO:0005666 RNA polymerase III complex IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005736 RNA polymerase I complex IEP Predict GO terms from Neighborhoods
CC GO:0005759 mitochondrial matrix IEP Predict GO terms from Neighborhoods
CC GO:0005778 peroxisomal membrane IEP Predict GO terms from Neighborhoods
CC GO:0005829 cytosol IEP Predict GO terms from Neighborhoods
CC GO:0005850 eukaryotic translation initiation factor 2 complex IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0006360 transcription by RNA polymerase I IEP Predict GO terms from Neighborhoods
BP GO:0006383 transcription by RNA polymerase III IEP Predict GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predict GO terms from Neighborhoods
BP GO:0006426 glycyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0006450 regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007275 multicellular organism development IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008168 methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008796 bis(5'-nucleosyl)-tetraphosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0009116 nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009119 ribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009292 horizontal gene transfer IEP Predict GO terms from Neighborhoods
BP GO:0009294 DNA-mediated transformation IEP Predict GO terms from Neighborhoods
BP GO:0009304 tRNA transcription IEP Predict GO terms from Neighborhoods
CC GO:0009532 plastid stroma IEP Predict GO terms from Neighborhoods
CC GO:0009534 chloroplast thylakoid IEP Predict GO terms from Neighborhoods
CC GO:0009570 chloroplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP Predict GO terms from Neighborhoods
BP GO:0010035 response to inorganic substance IEP Predict GO terms from Neighborhoods
BP GO:0010162 seed dormancy process IEP Predict GO terms from Neighborhoods
BP GO:0015074 DNA integration IEP Predict GO terms from Neighborhoods
BP GO:0015959 diadenosine polyphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0015960 diadenosine polyphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0015965 diadenosine tetraphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0015966 diadenosine tetraphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0016282 eukaryotic 43S preinitiation complex IEP Predict GO terms from Neighborhoods
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0016688 L-ascorbate peroxidase activity IEP Predict GO terms from Neighborhoods
MF GO:0016740 transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predict GO terms from Neighborhoods
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predict GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predict GO terms from Neighborhoods
MF GO:0019213 deacetylase activity IEP Predict GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0022611 dormancy process IEP Predict GO terms from Neighborhoods
BP GO:0030097 hemopoiesis IEP Predict GO terms from Neighborhoods
CC GO:0030424 axon IEP Predict GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
CC GO:0030688 preribosome, small subunit precursor IEP Predict GO terms from Neighborhoods
CC GO:0030880 RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0031167 rRNA methylation IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
CC GO:0031903 microbody membrane IEP Predict GO terms from Neighborhoods
CC GO:0031974 membrane-enclosed lumen IEP Predict GO terms from Neighborhoods
CC GO:0031976 plastid thylakoid IEP Predict GO terms from Neighborhoods
CC GO:0031984 organelle subcompartment IEP Predict GO terms from Neighborhoods
BP GO:0032196 transposition IEP Predict GO terms from Neighborhoods
BP GO:0032259 methylation IEP Predict GO terms from Neighborhoods
BP GO:0032502 developmental process IEP Predict GO terms from Neighborhoods
BP GO:0032989 cellular component morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0032990 cell part morphogenesis IEP Predict GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Predict GO terms from Neighborhoods
CC GO:0033290 eukaryotic 48S preinitiation complex IEP Predict GO terms from Neighborhoods
MF GO:0033558 protein lysine deacetylase activity IEP Predict GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Predict GO terms from Neighborhoods
BP GO:0035166 post-embryonic hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:0035167 larval lymph gland hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:0042278 purine nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042743 hydrogen peroxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042744 hydrogen peroxide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042797 tRNA transcription by RNA polymerase III IEP Predict GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Predict GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Predict GO terms from Neighborhoods
CC GO:0043233 organelle lumen IEP Predict GO terms from Neighborhoods
CC GO:0043614 multi-eIF complex IEP Predict GO terms from Neighborhoods
CC GO:0044815 DNA packaging complex IEP Predict GO terms from Neighborhoods
BP GO:0045903 positive regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0046085 adenosine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046128 purine ribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0046409 p-coumarate 3-hydroxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046686 response to cadmium ion IEP Predict GO terms from Neighborhoods
BP GO:0048534 hematopoietic or lymphoid organ development IEP Predict GO terms from Neighborhoods
BP GO:0048569 post-embryonic animal organ development IEP Predict GO terms from Neighborhoods
BP GO:0048812 neuron projection morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048813 dendrite morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048856 anatomical structure development IEP Predict GO terms from Neighborhoods
BP GO:0048858 cell projection morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050688 regulation of defense response to virus IEP Predict GO terms from Neighborhoods
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061982 meiosis I cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0065001 specification of axis polarity IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0070013 intracellular organelle lumen IEP Predict GO terms from Neighborhoods
BP GO:0070127 tRNA aminoacylation for mitochondrial protein translation IEP Predict GO terms from Neighborhoods
BP GO:0070150 mitochondrial glycyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0070893 transposon integration IEP Predict GO terms from Neighborhoods
CC GO:0070993 translation preinitiation complex IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Predict GO terms from Neighborhoods
BP GO:0098781 ncRNA transcription IEP Predict GO terms from Neighborhoods
BP GO:0098869 cellular oxidant detoxification IEP Predict GO terms from Neighborhoods
BP GO:0120039 plasma membrane bounded cell projection morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Predict GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predict GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Predict GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
MF GO:1990856 methionyl-initiator methionine tRNA binding IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001680 WD40_repeat 206 236
No external refs found!