SOLTUB.AGRIA.G00000027947

Description : LOB domain-containing protein, putative

Gene families : OG_02_0010127 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000027947
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_13

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009556	microsporogenesis	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009786	regulation of asymmetric cell division	IEA	AHRD
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009799	specification of symmetry	IEA	AHRD
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEA	AHRD
BP	GO:0009954	proximal/distal pattern formation	IEA	AHRD
BP	GO:0009965	leaf morphogenesis	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010087	phloem or xylem histogenesis	IEA	AHRD
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEA	AHRD
BP	GO:0010311	lateral root formation	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034293	sexual sporulation	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043934	sporulation	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048236	plant-type sporogenesis	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048441	petal development	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048859	formation of anatomical boundary	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051302	regulation of cell division	None	Extended
BP	GO:0051321	meiotic cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090691	formation of plant organ boundary	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:1905393	plant organ formation	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000245	spliceosomal complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000349	generation of catalytic spliceosome for first transesterification step	IEP	Predict GO terms from Neighborhoods
BP	GO:0000380	alternative mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0000384	first spliceosomal transesterification activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001503	ossification	IEP	Predict GO terms from Neighborhoods
BP	GO:0001835	blastocyst hatching	IEP	Predict GO terms from Neighborhoods
BP	GO:0002021	response to dietary excess	IEP	Predict GO terms from Neighborhoods
CC	GO:0005686	U2 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005816	spindle pole body	IEP	Predict GO terms from Neighborhoods
CC	GO:0005819	spindle	IEP	Predict GO terms from Neighborhoods
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006023	aminoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006024	glycosaminoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006029	proteoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007080	mitotic metaphase plate congression	IEP	Predict GO terms from Neighborhoods
BP	GO:0007605	sensory perception of sound	IEP	Predict GO terms from Neighborhoods
MF	GO:0008013	beta-catenin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008587	imaginal disc-derived wing margin morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009101	glycoprotein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010450	inflorescence meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0015012	heparan sulfate proteoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019321	pentose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022416	chaeta development	IEP	Predict GO terms from Neighborhoods
BP	GO:0030166	proteoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030201	heparan sulfate proteoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030204	chondroitin sulfate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030206	chondroitin sulfate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030473	nuclear migration along microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0031063	regulation of histone deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031065	positive regulation of histone deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031505	fungal-type cell wall organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0032580	Golgi cisterna membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032873	negative regulation of stress-activated MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0033319	UDP-D-xylose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033320	UDP-D-xylose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035188	hatching	IEP	Predict GO terms from Neighborhoods
BP	GO:0042461	photoreceptor cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042732	D-xylose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043627	response to estrogen	IEP	Predict GO terms from Neighborhoods
BP	GO:0045444	fat cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045570	regulation of imaginal disc growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0045572	positive regulation of imaginal disc growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0045747	positive regulation of Notch signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0046329	negative regulation of JNK cascade	IEP	Predict GO terms from Neighborhoods
MF	GO:0048040	UDP-glucuronate decarboxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048448	stamen morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048461	flower structural organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0048832	specification of plant organ number	IEP	Predict GO terms from Neighborhoods
BP	GO:0048833	specification of floral organ number	IEP	Predict GO terms from Neighborhoods
BP	GO:0050872	white fat cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050954	sensory perception of mechanical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051216	cartilage development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051310	metaphase plate congression	IEP	Predict GO terms from Neighborhoods
BP	GO:0060612	adipose tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060613	fat pad development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061448	connective tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0070050	neuron cellular homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0070274	RES complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070303	negative regulation of stress-activated protein kinase signaling cascade	IEP	Predict GO terms from Neighborhoods
MF	GO:0070403	NAD+ binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071684	organism emergence from protective structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0071852	fungal-type cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0071920	cleavage body	IEP	Predict GO terms from Neighborhoods
CC	GO:0072686	mitotic spindle	IEP	Predict GO terms from Neighborhoods
BP	GO:0090207	regulation of triglyceride metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090311	regulation of protein deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090312	positive regulation of protein deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903510	mucopolysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR004883	LOB	44	139

External Links

No external refs found!

SOLTUB.AGRIA.G00000027947

Expression Profile

Co-expression Networks

Functional Annotation