SOLTUB.AGRIA.G00000028106


Description : 1-deoxy-D-xylulose-5-phosphate synthase


Gene families : OG_02_0020537 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000028106
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_255


Type GO Term Name Evidence Source
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEA AHRD
CC GO:0009507 chloroplast IEA AHRD
BP GO:0015995 chlorophyll biosynthetic process IEA AHRD
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0000272 polysaccharide catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0000325 plant-type vacuole IEP Predict GO terms from Neighborhoods
BP GO:0002831 regulation of response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0002833 positive regulation of response to biotic stimulus IEP Predict GO terms from Neighborhoods
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004016 adenylate cyclase activity IEP Predict GO terms from Neighborhoods
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predict GO terms from Neighborhoods
MF GO:0004807 triose-phosphate isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0004888 transmembrane signaling receptor activity IEP Predict GO terms from Neighborhoods
CC GO:0005618 cell wall IEP Predict GO terms from Neighborhoods
CC GO:0005774 vacuolar membrane IEP Predict GO terms from Neighborhoods
CC GO:0005886 plasma membrane IEP Predict GO terms from Neighborhoods
CC GO:0005887 integral component of plasma membrane IEP Predict GO terms from Neighborhoods
CC GO:0005911 cell-cell junction IEP Predict GO terms from Neighborhoods
BP GO:0005975 carbohydrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005996 monosaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006029 proteoglycan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006066 alcohol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006071 glycerol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006094 gluconeogenesis IEP Predict GO terms from Neighborhoods
BP GO:0006641 triglyceride metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006642 triglyceride mobilization IEP Predict GO terms from Neighborhoods
BP GO:0006670 sphingosine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006672 ceramide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006691 leukotriene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006692 prostanoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006693 prostaglandin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006766 vitamin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006767 water-soluble vitamin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007586 digestion IEP Predict GO terms from Neighborhoods
MF GO:0008066 glutamate receptor activity IEP Predict GO terms from Neighborhoods
MF GO:0008929 methylglyoxal synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0009044 xylan 1,4-beta-xylosidase activity IEP Predict GO terms from Neighborhoods
BP GO:0009101 glycoprotein biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009110 vitamin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009438 methylglyoxal metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0009506 plasmodesma IEP Predict GO terms from Neighborhoods
CC GO:0009514 glyoxysome IEP Predict GO terms from Neighborhoods
CC GO:0009526 plastid envelope IEP Predict GO terms from Neighborhoods
CC GO:0009574 preprophase band IEP Predict GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Predict GO terms from Neighborhoods
MF GO:0009674 potassium:sodium symporter activity IEP Predict GO terms from Neighborhoods
CC GO:0009941 chloroplast envelope IEP Predict GO terms from Neighborhoods
BP GO:0010034 response to acetate IEP Predict GO terms from Neighborhoods
BP GO:0010065 primary meristem tissue development IEP Predict GO terms from Neighborhoods
BP GO:0010067 procambium histogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010068 protoderm histogenesis IEP Predict GO terms from Neighborhoods
MF GO:0010178 IAA-amino acid conjugate hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0010179 IAA-Ala conjugate hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0010196 nonphotochemical quenching IEP Predict GO terms from Neighborhoods
MF GO:0010210 IAA-Phe conjugate hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0010211 IAA-Leu conjugate hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0010555 response to mannitol IEP Predict GO terms from Neighborhoods
MF GO:0015081 sodium ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015276 ligand-gated ion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0015370 solute:sodium symporter activity IEP Predict GO terms from Neighborhoods
CC GO:0016020 membrane IEP Predict GO terms from Neighborhoods
CC GO:0016021 integral component of membrane IEP Predict GO terms from Neighborhoods
BP GO:0016051 carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0016052 carbohydrate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016310 phosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predict GO terms from Neighborhoods
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predict GO terms from Neighborhoods
MF GO:0016632 oxidoreductase activity, acting on the CH-CH group of donors, cytochrome as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016633 galactonolactone dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predict GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016853 isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predict GO terms from Neighborhoods
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predict GO terms from Neighborhoods
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0017040 N-acylsphingosine amidohydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0017046 peptide hormone binding IEP Predict GO terms from Neighborhoods
BP GO:0019242 methylglyoxal biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019253 reductive pentose-phosphate cycle IEP Predict GO terms from Neighborhoods
BP GO:0019319 hexose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019400 alditol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019405 alditol catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019563 glycerol catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019685 photosynthesis, dark reaction IEP Predict GO terms from Neighborhoods
BP GO:0019751 polyol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019852 L-ascorbic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019853 L-ascorbic acid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0022834 ligand-gated channel activity IEP Predict GO terms from Neighborhoods
CC GO:0030054 cell junction IEP Predict GO terms from Neighborhoods
BP GO:0030148 sphingolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0030149 sphingolipid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030166 proteoglycan biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0030312 external encapsulating structure IEP Predict GO terms from Neighborhoods
BP GO:0030834 regulation of actin filament depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0030835 negative regulation of actin filament depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0030837 negative regulation of actin filament polymerization IEP Predict GO terms from Neighborhoods
CC GO:0031090 organelle membrane IEP Predict GO terms from Neighborhoods
BP GO:0031221 arabinan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031222 arabinan catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0031224 intrinsic component of membrane IEP Predict GO terms from Neighborhoods
CC GO:0031225 anchored component of membrane IEP Predict GO terms from Neighborhoods
CC GO:0031226 intrinsic component of plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0031347 regulation of defense response IEP Predict GO terms from Neighborhoods
BP GO:0031349 positive regulation of defense response IEP Predict GO terms from Neighborhoods
BP GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane IEP Predict GO terms from Neighborhoods
BP GO:0031936 obsolete negative regulation of chromatin silencing IEP Predict GO terms from Neighborhoods
CC GO:0031967 organelle envelope IEP Predict GO terms from Neighborhoods
CC GO:0031975 envelope IEP Predict GO terms from Neighborhoods
BP GO:0032101 regulation of response to external stimulus IEP Predict GO terms from Neighborhoods
BP GO:0032103 positive regulation of response to external stimulus IEP Predict GO terms from Neighborhoods
BP GO:0032272 negative regulation of protein polymerization IEP Predict GO terms from Neighborhoods
MF GO:0032440 2-alkenal reductase [NAD(P)+] activity IEP Predict GO terms from Neighborhoods
BP GO:0032504 multicellular organism reproduction IEP Predict GO terms from Neighborhoods
BP GO:0034311 diol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034312 diol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0035187 hatching behavior IEP Predict GO terms from Neighborhoods
MF GO:0035798 2-alkenal reductase (NADP+) activity IEP Predict GO terms from Neighborhoods
BP GO:0036102 leukotriene B4 metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0036132 13-prostaglandin reductase activity IEP Predict GO terms from Neighborhoods
MF GO:0036185 13-lipoxin reductase activity IEP Predict GO terms from Neighborhoods
BP GO:0036211 protein modification process IEP Predict GO terms from Neighborhoods
MF GO:0038023 signaling receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042759 long-chain fatty acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043242 negative regulation of protein-containing complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0043408 regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0043410 positive regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0044241 lipid digestion IEP Predict GO terms from Neighborhoods
BP GO:0044283 small molecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044347 cell wall polysaccharide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045010 actin nucleation IEP Predict GO terms from Neighborhoods
BP GO:0045088 regulation of innate immune response IEP Predict GO terms from Neighborhoods
BP GO:0045493 xylan catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045494 photoreceptor cell maintenance IEP Predict GO terms from Neighborhoods
BP GO:0046166 glyceraldehyde-3-phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046173 polyol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046174 polyol catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046184 aldehyde biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046364 monosaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046394 carboxylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046466 membrane lipid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046512 sphingosine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046513 ceramide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046514 ceramide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046519 sphingoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046520 sphingoid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predict GO terms from Neighborhoods
CC GO:0046658 anchored component of plasma membrane IEP Predict GO terms from Neighborhoods
MF GO:0046873 metal ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0047918 GDP-mannose 3,5-epimerase activity IEP Predict GO terms from Neighborhoods
BP GO:0048229 gametophyte development IEP Predict GO terms from Neighborhoods
BP GO:0048499 synaptic vesicle membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0048507 meristem development IEP Predict GO terms from Neighborhoods
BP GO:0048508 embryonic meristem development IEP Predict GO terms from Neighborhoods
MF GO:0050105 L-gulonolactone oxidase activity IEP Predict GO terms from Neighborhoods
BP GO:0051016 barbed-end actin filament capping IEP Predict GO terms from Neighborhoods
BP GO:0051017 actin filament bundle assembly IEP Predict GO terms from Neighborhoods
BP GO:0051693 actin filament capping IEP Predict GO terms from Neighborhoods
MF GO:0052579 (+)-pulegone reductase, (+)-isomenthone as substrate, activity IEP Predict GO terms from Neighborhoods
MF GO:0052580 (+)-pulegone reductase, (-)-menthone as substrate, activity IEP Predict GO terms from Neighborhoods
MF GO:0060089 molecular transducer activity IEP Predict GO terms from Neighborhoods
BP GO:0060178 regulation of exocyst localization IEP Predict GO terms from Neighborhoods
BP GO:0060866 leaf abscission IEP Predict GO terms from Neighborhoods
BP GO:0061572 actin filament bundle organization IEP Predict GO terms from Neighborhoods
CC GO:0070161 anchoring junction IEP Predict GO terms from Neighborhoods
MF GO:0070402 NADPH binding IEP Predict GO terms from Neighborhoods
MF GO:0070774 phytoceramidase activity IEP Predict GO terms from Neighborhoods
BP GO:0070887 cellular response to chemical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071230 cellular response to amino acid stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071260 cellular response to mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071310 cellular response to organic substance IEP Predict GO terms from Neighborhoods
BP GO:0071311 cellular response to acetate IEP Predict GO terms from Neighborhoods
BP GO:0071323 cellular response to chitin IEP Predict GO terms from Neighborhoods
BP GO:0071417 cellular response to organonitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:0071495 cellular response to endogenous stimulus IEP Predict GO terms from Neighborhoods
MF GO:0071633 dihydroceramidase activity IEP Predict GO terms from Neighborhoods
MF GO:0071949 FAD binding IEP Predict GO terms from Neighborhoods
MF GO:0080049 L-gulono-1,4-lactone dehydrogenase activity IEP Predict GO terms from Neighborhoods
BP GO:0090156 cellular sphingolipid homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0090548 response to nitrate starvation IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0090617 mitochondrial mRNA 5'-end processing IEP Predict GO terms from Neighborhoods
MF GO:0097257 leukotriene B4 12-hydroxy dehydrogenase activity IEP Predict GO terms from Neighborhoods
BP GO:0097327 response to antineoplastic agent IEP Predict GO terms from Neighborhoods
MF GO:0097599 xylanase activity IEP Predict GO terms from Neighborhoods
BP GO:0098662 inorganic cation transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0099500 vesicle fusion to plasma membrane IEP Predict GO terms from Neighborhoods
MF GO:0102121 ceramidase activity IEP Predict GO terms from Neighborhoods
MF GO:0106310 protein serine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0140029 exocytic process IEP Predict GO terms from Neighborhoods
BP GO:1900150 regulation of defense response to fungus IEP Predict GO terms from Neighborhoods
BP GO:1900424 regulation of defense response to bacterium IEP Predict GO terms from Neighborhoods
BP GO:1900426 positive regulation of defense response to bacterium IEP Predict GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:1901334 lactone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901336 lactone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901615 organic hydroxy compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901699 cellular response to nitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:1901701 cellular response to oxygen-containing compound IEP Predict GO terms from Neighborhoods
BP GO:1901880 negative regulation of protein depolymerization IEP Predict GO terms from Neighborhoods
BP GO:1902288 regulation of defense response to oomycetes IEP Predict GO terms from Neighborhoods
BP GO:1902290 positive regulation of defense response to oomycetes IEP Predict GO terms from Neighborhoods
BP GO:1902533 positive regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:1990066 energy quenching IEP Predict GO terms from Neighborhoods
MF GO:1990206 jasmonyl-Ile conjugate hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:1990573 potassium ion import across plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:2000895 hemicellulose catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2001300 lipoxin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2001302 lipoxin A4 metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR005477 Dxylulose-5-P_synthase 75 696
IPR009014 Transketo_C/PFOR_II 562 699
IPR029061 THDP-binding 70 452
IPR033248 Transketolase_C 567 690
IPR005477 Dxylulose-5-P_synthase 73 357
IPR029061 THDP-binding 390 577
IPR005475 Transketolase-like_Pyr-bd 391 552
No external refs found!