Coexpression cluster: Cluster_255 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0048025 negative regulation of mRNA splicing, via spliceosome 4.69% (3/64) 6.08 1.2e-05 0.009495
GO:0050686 negative regulation of mRNA processing 4.69% (3/64) 5.84 2e-05 0.010671
GO:0050684 regulation of mRNA processing 7.81% (5/64) 3.71 4.2e-05 0.013438
GO:0003960 NADPH:quinone reductase activity 3.12% (2/64) 7.25 7.3e-05 0.014639
GO:0042180 cellular ketone metabolic process 7.81% (5/64) 4.15 1e-05 0.015341
GO:0006376 mRNA splice site selection 4.69% (3/64) 5.25 6.9e-05 0.015652
GO:0033119 negative regulation of RNA splicing 4.69% (3/64) 5.52 4e-05 0.015793
GO:1990446 U1 snRNP binding 3.12% (2/64) 6.35 0.000273 0.016767
GO:0019884 antigen processing and presentation of exogenous antigen 3.12% (2/64) 6.35 0.000273 0.016767
GO:0044249 cellular biosynthetic process 32.81% (21/64) 1.23 0.000107 0.017016
GO:0110165 cellular anatomical entity 81.25% (52/64) 0.43 0.000259 0.017242
GO:0003674 molecular_function 82.81% (53/64) 0.47 6.5e-05 0.017295
GO:1901661 quinone metabolic process 4.69% (3/64) 5.08 9.8e-05 0.017336
GO:0071826 ribonucleoprotein complex subunit organization 7.81% (5/64) 3.1 0.000295 0.01744
GO:0048024 regulation of mRNA splicing, via spliceosome 6.25% (4/64) 3.72 0.000252 0.0175
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 4.69% (3/64) 4.52 0.000314 0.017906
GO:0002495 antigen processing and presentation of peptide antigen via MHC class II 3.12% (2/64) 6.45 0.000237 0.01801
GO:1901576 organic substance biosynthetic process 32.81% (21/64) 1.14 0.000249 0.018032
GO:0071704 organic substance metabolic process 59.38% (38/64) 0.68 0.000228 0.018221
GO:0002478 antigen processing and presentation of exogenous peptide antigen 3.12% (2/64) 6.55 0.000203 0.01909
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II 3.12% (2/64) 6.55 0.000203 0.01909
GO:0050661 NADP binding 6.25% (4/64) 3.75 0.000227 0.019096
GO:0044281 small molecule metabolic process 25.0% (16/64) 1.35 0.000349 0.019199
GO:0022618 ribonucleoprotein complex assembly 7.81% (5/64) 3.19 0.000226 0.020038
GO:0006081 cellular aldehyde metabolic process 6.25% (4/64) 3.54 0.0004 0.020565
GO:0005575 cellular_component 82.81% (53/64) 0.44 0.000143 0.020784
GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II 3.12% (2/64) 6.01 0.000443 0.020793
GO:0048002 antigen processing and presentation of peptide antigen 3.12% (2/64) 6.01 0.000443 0.020793
GO:0009987 cellular process 73.44% (47/64) 0.49 0.000419 0.02086
GO:0070990 snRNP binding 3.12% (2/64) 6.08 0.000397 0.021107
GO:0044237 cellular metabolic process 56.25% (36/64) 0.73 0.0002 0.021215
GO:0008150 biological_process 82.81% (53/64) 0.43 0.000194 0.022122
GO:0008152 metabolic process 62.5% (40/64) 0.65 0.000192 0.02358
GO:0009058 biosynthetic process 34.38% (22/64) 1.13 0.000183 0.024276
GO:1903311 regulation of mRNA metabolic process 7.81% (5/64) 2.9 0.000562 0.025621
GO:0022607 cellular component assembly 18.75% (12/64) 1.56 0.000615 0.027256
GO:0033987 2-hydroxyisoflavanone dehydratase activity 3.12% (2/64) 5.73 0.000653 0.02815
GO:1903312 negative regulation of mRNA metabolic process 4.69% (3/64) 4.13 0.000697 0.02924
GO:0043484 regulation of RNA splicing 6.25% (4/64) 3.31 0.000723 0.029584
GO:0005685 U1 snRNP 3.12% (2/64) 5.61 0.000773 0.030811
GO:0032787 monocarboxylic acid metabolic process 14.06% (9/64) 1.83 0.000918 0.034057
GO:0009438 methylglyoxal metabolic process 3.12% (2/64) 5.5 0.000902 0.03426
GO:0042181 ketone biosynthetic process 4.69% (3/64) 4.01 0.000884 0.0344
GO:0005829 cytosol 29.69% (19/64) 1.06 0.001125 0.039891
GO:0003730 mRNA 3'-UTR binding 4.69% (3/64) 3.9 0.001101 0.039921
GO:0006743 ubiquinone metabolic process 3.12% (2/64) 5.25 0.001268 0.041279
GO:0006744 ubiquinone biosynthetic process 3.12% (2/64) 5.25 0.001268 0.041279
GO:0019682 glyceraldehyde-3-phosphate metabolic process 3.12% (2/64) 5.25 0.001268 0.041279
GO:0043229 intracellular organelle 59.38% (38/64) 0.57 0.001296 0.041349
GO:0098588 bounding membrane of organelle 20.31% (13/64) 1.38 0.001204 0.041736
GO:0043333 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity 1.56% (1/64) 9.25 0.001637 0.043526
GO:0043334 2-hexaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity 1.56% (1/64) 9.25 0.001637 0.043526
GO:0043429 2-nonaprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity 1.56% (1/64) 9.25 0.001637 0.043526
GO:0018293 protein-FAD linkage 1.56% (1/64) 9.25 0.001637 0.043526
GO:0034552 respiratory chain complex II assembly 1.56% (1/64) 9.25 0.001637 0.043526
GO:0034553 mitochondrial respiratory chain complex II assembly 1.56% (1/64) 9.25 0.001637 0.043526
GO:0001711 endodermal cell fate commitment 1.56% (1/64) 9.25 0.001637 0.043526
GO:0060795 cell fate commitment involved in formation of primary germ layer 1.56% (1/64) 9.25 0.001637 0.043526
GO:0000387 spliceosomal snRNP assembly 3.12% (2/64) 5.04 0.001694 0.044289
GO:0016052 carbohydrate catabolic process 7.81% (5/64) 2.59 0.001476 0.045263
GO:0043226 organelle 59.38% (38/64) 0.56 0.001467 0.045892
GO:0006090 pyruvate metabolic process 4.69% (3/64) 3.63 0.001871 0.048142
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_23 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_43 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_149 0.018 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_151 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_168 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_180 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_203 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (64) (download table)

InterPro Domains

GO Terms

Family Terms