SOLTUB.AGRIA.G00000028215

Description : Ribosomal RNA small subunit methyltransferase NEP1

Gene families : OG_02_0016127 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000028215
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_238

Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	None	Extended
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000469	cleavage involved in rRNA processing	None	Extended
BP	GO:0000472	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	None	Extended
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	None	Extended
BP	GO:0000480	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000966	RNA 5'-end processing	None	Extended
BP	GO:0000967	rRNA 5'-end processing	None	Extended
BP	GO:0001510	RNA methylation	None	Extended
BP	GO:0001824	blastocyst development	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005874	microtubule	None	Extended
CC	GO:0005880	nuclear microtubule	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0007000	nucleolus organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	None	Extended
MF	GO:0008649	rRNA methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0017126	nucleologenesis	IEA	AHRD
MF	GO:0019843	rRNA binding	IEA	AHRD
CC	GO:0030684	preribosome	None	Extended
CC	GO:0030686	90S preribosome	IEA	AHRD
BP	GO:0031167	rRNA methylation	None	Extended
CC	GO:0032040	small-subunit processome	IEA	AHRD
BP	GO:0032259	methylation	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034471	ncRNA 5'-end processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0036260	RNA capping	None	Extended
BP	GO:0042742	defense response to bacterium	IEA	AHRD
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
MF	GO:0070037	rRNA (pseudouridine) methyltransferase activity	IEA	AHRD
BP	GO:0070475	rRNA base methylation	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0090501	RNA phosphodiester bond hydrolysis	None	Extended
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0099081	supramolecular polymer	None	Extended
CC	GO:0099512	supramolecular fiber	None	Extended
CC	GO:0099513	polymeric cytoskeletal fiber	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140102	catalytic activity, acting on a rRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000027	ribosomal large subunit assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0000178	exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
MF	GO:0000179	rRNA (adenine-N6,N6-)-dimethyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000459	exonucleolytic trimming involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000464	endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000465	exonucleolytic trimming to generate mature 5'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0001708	cell fate specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0001731	formation of translation preinitiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0001732	formation of cytoplasmic translation initiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0001944	vasculature development	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004407	histone deacetylase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005829	cytosol	IEP	Predict GO terms from Neighborhoods
CC	GO:0005850	eukaryotic translation initiation factor 2 complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006401	RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006402	mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006417	regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006446	regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006450	regulation of translational fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0007420	brain development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009292	horizontal gene transfer	IEP	Predict GO terms from Neighborhoods
BP	GO:0009294	DNA-mediated transformation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009749	response to glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009889	regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010162	seed dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010628	positive regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0016073	snRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016180	snRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0016282	eukaryotic 43S preinitiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016433	rRNA (adenine) methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predict GO terms from Neighborhoods
MF	GO:0019213	deacetylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019222	regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0022611	dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0030687	preribosome, large subunit precursor	IEP	Predict GO terms from Neighborhoods
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predict GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031330	negative regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0031981	nuclear lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032435	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0033290	eukaryotic 48S preinitiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0033558	protein lysine deacetylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034286	response to maltose	IEP	Predict GO terms from Neighborhoods
BP	GO:0034472	snRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034661	ncRNA catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042134	rRNA primary transcript binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042177	negative regulation of protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042788	polysomal ribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0043614	multi-eIF complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0043633	polyadenylation-dependent RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045861	negative regulation of proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045903	positive regulation of translational fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045948	positive regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046085	adenosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048882	lateral line development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061136	regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0065001	specification of axis polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Predict GO terms from Neighborhoods
MF	GO:0070122	obsolete isopeptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070993	translation preinitiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071025	RNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071027	nuclear RNA surveillance	IEP	Predict GO terms from Neighborhoods
CC	GO:0071541	eukaryotic translation initiation factor 3 complex, eIF3m	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	IEP	Predict GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901799	negative regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903051	negative regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1905354	exoribonuclease complex	IEP	Predict GO terms from Neighborhoods
MF	GO:1990856	methionyl-initiator methionine tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000058	regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000059	negative regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005304	Rbsml_bgen_MeTrfase_EMG1/NEP1	76	272
IPR029028	Alpha/beta_knot_MTases	63	277

External Links

No external refs found!

SOLTUB.AGRIA.G00000028215

Expression Profile

Co-expression Networks

Functional Annotation