SOLTUB.AGRIA.G00000028276

Description : Pentatricopeptide repeat-containing protein, putative

Gene families : OG_02_0016142 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000028276
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_27

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0043412	macromolecule modification	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003913	DNA photolyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004032	alditol:NADP+ 1-oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004033	aldo-keto reductase (NADP) activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005779	integral component of peroxisomal membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0005985	sucrose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005986	sucrose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006000	fructose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006002	fructose 6-phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006006	glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006094	gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006099	tricarboxylic acid cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0006107	oxaloacetate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006108	malate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006638	neutral lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006639	acylglycerol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006734	NADH metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0008106	alcohol dehydrogenase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008970	phospholipase A1 activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009237	siderophore metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0009583	detection of light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009638	phototropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009645	response to low light intensity stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009649	entrainment of circadian clock	IEP	Predict GO terms from Neighborhoods
BP	GO:0009650	UV protection	IEP	Predict GO terms from Neighborhoods
BP	GO:0009710	tropane alkaloid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009750	response to fructose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009767	photosynthetic electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0009773	photosynthetic electron transport in photosystem I	IEP	Predict GO terms from Neighborhoods
BP	GO:0009785	blue light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009820	alkaloid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009821	alkaloid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009822	alkaloid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0009881	photoreceptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009882	blue light photoreceptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010117	photoprotection	IEP	Predict GO terms from Neighborhoods
BP	GO:0010187	negative regulation of seed germination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010244	response to low fluence blue light stimulus by blue low-fluence system	IEP	Predict GO terms from Neighborhoods
CC	GO:0010287	plastoglobule	IEP	Predict GO terms from Neighborhoods
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0010319	stromule	IEP	Predict GO terms from Neighborhoods
BP	GO:0010343	singlet oxygen-mediated programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0010617	circadian regulation of calcium ion oscillation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016229	steroid dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016559	peroxisome fission	IEP	Predict GO terms from Neighborhoods
CC	GO:0016605	PML body	IEP	Predict GO terms from Neighborhoods
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016615	malate dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Predict GO terms from Neighborhoods
BP	GO:0018298	obsolete protein-chromophore linkage	IEP	Predict GO terms from Neighborhoods
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019253	reductive pentose-phosphate cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0019290	siderophore biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019319	hexose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019685	photosynthesis, dark reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0019915	lipid storage	IEP	Predict GO terms from Neighborhoods
MF	GO:0030060	L-malate dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030388	fructose 1,6-bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030522	intracellular receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0031231	intrinsic component of peroxisomal membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032411	positive regulation of transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032414	positive regulation of ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032922	circadian regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0033075	isoquinoline alkaloid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033076	isoquinoline alkaloid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0033707	3''-deamino-3''-oxonicotianamine reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034224	cellular response to zinc ion starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034644	cellular response to UV	IEP	Predict GO terms from Neighborhoods
BP	GO:0035835	indole alkaloid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0036473	cell death in response to oxidative stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042181	ketone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042182	ketone catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043153	entrainment of circadian clock by photoperiod	IEP	Predict GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044375	regulation of peroxisome size	IEP	Predict GO terms from Neighborhoods
BP	GO:0046339	diacylglycerol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046340	diacylglycerol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046448	tropane alkaloid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046461	neutral lipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046462	monoacylglycerol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046464	acylglycerol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046503	glycerolipid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046554	malate dehydrogenase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047036	codeinone reductase (NADPH) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047372	acylglycerol lipase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047834	D-threo-aldose 1-dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048571	long-day photoperiodism	IEP	Predict GO terms from Neighborhoods
BP	GO:0048574	long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048581	negative regulation of post-embryonic development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050308	sugar-phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051480	regulation of cytosolic calcium ion concentration	IEP	Predict GO terms from Neighborhoods
MF	GO:0052582	(+)-menthofuran synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0052651	monoacylglycerol catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0070401	NADP+ binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071000	response to magnetism	IEP	Predict GO terms from Neighborhoods
BP	GO:0071214	cellular response to abiotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071272	morphine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071478	cellular response to radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071482	cellular response to light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071483	cellular response to blue light	IEP	Predict GO terms from Neighborhoods
BP	GO:0071493	cellular response to UV-B	IEP	Predict GO terms from Neighborhoods
MF	GO:0071949	FAD binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0072387	flavin adenine dinucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0097295	morphine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0097468	programmed cell death in response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
MF	GO:0102627	parthenolide 3beta-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102628	costunolide 3beta-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0104004	cellular response to environmental stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0120127	response to zinc ion starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900618	regulation of shoot system morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1901332	negative regulation of lateral root development	IEP	Predict GO terms from Neighborhoods
BP	GO:1901371	regulation of leaf morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1901376	organic heteropentacyclic compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901378	organic heteropentacyclic compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901529	positive regulation of anion channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901672	positive regulation of systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:1901867	ecgonine methyl ester metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901868	ecgonine methyl ester catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901869	ecgonine methyl ester biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901870	ecgonone methyl ester metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901871	ecgonone methyl ester catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901872	ecgonone methyl ester biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902347	response to strigolactone	IEP	Predict GO terms from Neighborhoods
BP	GO:1902446	regulation of shade avoidance	IEP	Predict GO terms from Neighborhoods
BP	GO:1902448	positive regulation of shade avoidance	IEP	Predict GO terms from Neighborhoods
BP	GO:1903793	positive regulation of anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903961	positive regulation of anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1990641	response to iron ion starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000379	positive regulation of reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	319	348
IPR002885	Pentatricopeptide_repeat	215	244
IPR002885	Pentatricopeptide_repeat	249	283
IPR002885	Pentatricopeptide_repeat	145	175
IPR002885	Pentatricopeptide_repeat	424	457
IPR002885	Pentatricopeptide_repeat	179	212
IPR002885	Pentatricopeptide_repeat	390	423
IPR002885	Pentatricopeptide_repeat	319	353
IPR002885	Pentatricopeptide_repeat	354	388
IPR002885	Pentatricopeptide_repeat	215	248
IPR002885	Pentatricopeptide_repeat	285	317
IPR002885	Pentatricopeptide_repeat	351	399
IPR002885	Pentatricopeptide_repeat	246	295
IPR002885	Pentatricopeptide_repeat	421	465
IPR002885	Pentatricopeptide_repeat	128	188

External Links

No external refs found!

SOLTUB.AGRIA.G00000028276

Expression Profile

Co-expression Networks

Functional Annotation