SOLTUB.AGRIA.G00000028572

Description : 30S ribosomal protein S11

Gene families : OG_02_0020577 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000028572
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_248

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEA	AHRD
CC	GO:0000314	organellar small ribosomal subunit	None	Extended
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000741	karyogamy	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	AHRD
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005763	mitochondrial small ribosomal subunit	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006412	translation	IEA	AHRD
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010197	polar nucleus fusion	IEA	AHRD
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
BP	GO:0030490	maturation of SSU-rRNA	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0048027	mRNA 5'-UTR binding	IEA	AHRD
BP	GO:0048284	organelle fusion	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
MF	GO:0070181	small ribosomal subunit rRNA binding	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predict GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0001732	formation of cytoplasmic translation initiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0001944	vasculature development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002181	cytoplasmic translation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005216	ion channel activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005829	cytosol	IEP	Predict GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006446	regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006821	chloride transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006884	cell volume homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007420	brain development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008361	regulation of cell size	IEP	Predict GO terms from Neighborhoods
BP	GO:0008593	regulation of Notch signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009743	response to carbohydrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0009744	response to sucrose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009746	response to hexose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009749	response to glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009846	pollen germination	IEP	Predict GO terms from Neighborhoods
BP	GO:0009895	negative regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0015267	channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015698	inorganic anion transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0016032	viral process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016282	eukaryotic 43S preinitiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Predict GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031330	negative regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032435	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032535	regulation of cellular component size	IEP	Predict GO terms from Neighborhoods
CC	GO:0033290	eukaryotic 48S preinitiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034284	response to monosaccharide	IEP	Predict GO terms from Neighborhoods
BP	GO:0034285	response to disaccharide	IEP	Predict GO terms from Neighborhoods
BP	GO:0034286	response to maltose	IEP	Predict GO terms from Neighborhoods
BP	GO:0042177	negative regulation of protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042788	polysomal ribosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045292	mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045747	positive regulation of Notch signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0045794	negative regulation of cell volume	IEP	Predict GO terms from Neighborhoods
BP	GO:0045861	negative regulation of proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045948	positive regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048513	animal organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048882	lateral line development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061136	regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0070122	obsolete isopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Predict GO terms from Neighborhoods
CC	GO:0070993	translation preinitiation complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071541	eukaryotic translation initiation factor 3 complex, eIF3m	IEP	Predict GO terms from Neighborhoods
BP	GO:0075522	IRES-dependent viral translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090066	regulation of anatomical structure size	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901799	negative regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903050	regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903051	negative regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000058	regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000059	negative regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001971	Ribosomal_S11	116	232

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SOLTUB.AGRIA.G00000028572

Expression Profile

Co-expression Networks

Functional Annotation