SOLTUB.AGRIA.G00000028669

Description : RING/U-box superfamily protein

Gene families : OG_02_0020583 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000028669
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_118

Type	GO Term	Name	Evidence	Source
BP	GO:0000209	protein polyubiquitination	None	Extended
BP	GO:0000820	regulation of glutamine family amino acid metabolic process	None	Extended
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0005102	signaling receptor binding	None	Extended
MF	GO:0005154	epidermal growth factor receptor binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IEA	AHRD
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006521	regulation of cellular amino acid metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	None	Extended
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEA	AHRD
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0010565	regulation of cellular ketone metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016567	protein ubiquitination	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0030104	water homeostasis	IEA	AHRD
BP	GO:0030163	protein catabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033238	regulation of cellular amine metabolic process	None	Extended
BP	GO:0033239	negative regulation of cellular amine metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0045763	negative regulation of cellular amino acid metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0047484	regulation of response to osmotic stress	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0060147	regulation of post-transcriptional gene silencing	None	Extended
BP	GO:0060148	positive regulation of post-transcriptional gene silencing	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0060964	regulation of miRNA-mediated gene silencing	None	Extended
BP	GO:0060966	regulation of gene silencing by RNA	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	AHRD
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0062012	regulation of small molecule metabolic process	None	Extended
BP	GO:0062014	negative regulation of small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070534	protein K63-linked ubiquitination	IEA	AHRD
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
MF	GO:0070851	growth factor receptor binding	None	Extended
BP	GO:0070936	protein K48-linked ubiquitination	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090378	seed trichome elongation	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1900368	regulation of post-transcriptional gene silencing by RNA	None	Extended
BP	GO:1900370	positive regulation of post-transcriptional gene silencing by RNA	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1902005	regulation of proline biosynthetic process	None	Extended
BP	GO:1902006	negative regulation of proline biosynthetic process	IEA	AHRD
BP	GO:2000070	regulation of response to water deprivation	IEA	AHRD
BP	GO:2000214	regulation of proline metabolic process	None	Extended
BP	GO:2000215	negative regulation of proline metabolic process	None	Extended
BP	GO:2000282	regulation of cellular amino acid biosynthetic process	None	Extended
BP	GO:2000283	negative regulation of cellular amino acid biosynthetic process	None	Extended
BP	GO:2000637	positive regulation of miRNA-mediated gene silencing	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000702	oxidized base lesion DNA N-glycosylase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0000938	GARP complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0001872	(1->3)-beta-D-glucan binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003779	actin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003785	actin monomer binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006076	(1->3)-beta-D-glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006914	autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0007030	Golgi organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007041	lysosomal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007155	cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007586	digestion	IEP	Predict GO terms from Neighborhoods
MF	GO:0008422	beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009251	glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009887	animal organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010091	trichome branching	IEP	Predict GO terms from Neighborhoods
CC	GO:0010287	plastoglobule	IEP	Predict GO terms from Neighborhoods
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010517	regulation of phospholipase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015926	glucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016197	endosomal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016482	cytosolic transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019905	syntaxin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030247	polysaccharide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031209	SCAR complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032386	regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032387	negative regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032388	positive regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032456	endocytic recycling	IEP	Predict GO terms from Neighborhoods
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032970	regulation of actin filament-based process	IEP	Predict GO terms from Neighborhoods
MF	GO:0034237	protein kinase A regulatory subunit binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034315	regulation of Arp2/3 complex-mediated actin nucleation	IEP	Predict GO terms from Neighborhoods
BP	GO:0040017	positive regulation of locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Predict GO terms from Neighborhoods
MF	GO:0042973	glucan endo-1,3-beta-D-glucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044241	lipid digestion	IEP	Predict GO terms from Neighborhoods
BP	GO:0044247	cellular polysaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0046658	anchored component of plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0048520	positive regulation of behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0048854	brain morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050795	regulation of behavior	IEP	Predict GO terms from Neighborhoods
MF	GO:0051018	protein kinase A binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051051	negative regulation of transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051125	regulation of actin nucleation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051127	positive regulation of actin nucleation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051275	beta-glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060191	regulation of lipase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Predict GO terms from Neighborhoods
MF	GO:0071933	Arp2/3 complex binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090325	regulation of locomotion involved in locomotory behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0090326	positive regulation of locomotion involved in locomotory behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0098609	cell-cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0098876	vesicle-mediated transport to the plasma membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0099023	vesicle tethering complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0110053	regulation of actin filament organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0140078	class I DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1903649	regulation of cytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903650	negative regulation of cytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903651	positive regulation of cytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904809	regulation of dense core granule transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904810	negative regulation of dense core granule transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904811	positive regulation of dense core granule transport	IEP	Predict GO terms from Neighborhoods
CC	GO:1990745	EARP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000601	positive regulation of Arp2/3 complex-mediated actin nucleation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR039525	RNF126-like_zinc-ribbon	7	37
IPR001841	Znf_RING	173	215

External Links

No external refs found!

SOLTUB.AGRIA.G00000028669

Expression Profile

Co-expression Networks

Functional Annotation