SOLTUB.AGRIA.G00000002983

Description : Protein gamma response 1

Gene families : OG_02_0007583 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002983

Type	GO Term	Name	Evidence	Source
MF	GO:0000014	single-stranded DNA endodeoxyribonuclease activity	IEA	AHRD
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEA	AHRD
BP	GO:0000729	DNA double-strand break processing	None	Extended
BP	GO:0001835	blastocyst hatching	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	AHRD
MF	GO:0003712	transcription coregulator activity	None	Extended
MF	GO:0003714	transcription corepressor activity	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004520	endodeoxyribonuclease activity	None	Extended
MF	GO:0004536	deoxyribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005667	transcription regulator complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010792	DNA double-strand break processing involved in repair via single-strand annealing	IEA	AHRD
BP	GO:0014070	response to organic cyclic compound	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
CC	GO:0017053	transcription repressor complex	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032355	response to estradiol	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035188	hatching	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044770	cell cycle phase transition	None	Extended
BP	GO:0044772	mitotic cell cycle phase transition	None	Extended
BP	GO:0044843	cell cycle G1/S phase transition	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
MF	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071684	organism emergence from protective structure	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903047	mitotic cell cycle process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000012	single strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0000018	regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0000076	DNA replication checkpoint signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0000217	DNA secondary structure binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000281	mitotic cytokinesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0000775	chromosome, centromeric region	IEP	Predict GO terms from Neighborhoods
CC	GO:0000779	condensed chromosome, centromeric region	IEP	Predict GO terms from Neighborhoods
CC	GO:0000796	condensin complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000910	cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0000911	cytokinesis by cell plate formation	IEP	Predict GO terms from Neighborhoods
CC	GO:0000922	spindle pole	IEP	Predict GO terms from Neighborhoods
BP	GO:0002637	regulation of immunoglobulin production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002639	positive regulation of immunoglobulin production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002694	regulation of leukocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002696	positive regulation of leukocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002697	regulation of immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002699	positive regulation of immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002700	regulation of production of molecular mediator of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002702	positive regulation of production of molecular mediator of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002703	regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002705	positive regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002706	regulation of lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002708	positive regulation of lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002712	regulation of B cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002714	positive regulation of B cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002819	regulation of adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002821	positive regulation of adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002822	regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	IEP	Predict GO terms from Neighborhoods
BP	GO:0002824	positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	IEP	Predict GO terms from Neighborhoods
BP	GO:0002889	regulation of immunoglobulin mediated immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002891	positive regulation of immunoglobulin mediated immune response	IEP	Predict GO terms from Neighborhoods
MF	GO:0003680	minor groove of adenine-thymine-rich DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005871	kinesin complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005875	microtubule associated complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005929	cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0006275	regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0007051	spindle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007052	mitotic spindle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007059	chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007062	sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007063	regulation of sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007076	mitotic chromosome condensation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007112	male meiosis cytokinesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0008156	negative regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
MF	GO:0008574	plus-end-directed microtubule motor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009524	phragmoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0009790	embryo development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010032	meiotic chromosome condensation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010639	negative regulation of organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010970	transport along microtubule	IEP	Predict GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022611	dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030261	chromosome condensation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030425	dendrite	IEP	Predict GO terms from Neighborhoods
BP	GO:0030705	cytoskeleton-dependent intracellular transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0030993	axonemal heterotrimeric kinesin-II complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031058	positive regulation of histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0031060	regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031062	positive regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0031298	replication fork protection complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031345	negative regulation of cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031346	positive regulation of cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031503	protein-containing complex localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0032153	cell division site	IEP	Predict GO terms from Neighborhoods
BP	GO:0033043	regulation of organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033206	meiotic cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0033554	cellular response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0034502	protein localization to chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0034708	methyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0035097	histone methyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0035556	intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0035720	intraciliary anterograde transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0036064	ciliary basal body	IEP	Predict GO terms from Neighborhoods
BP	GO:0042073	intraciliary transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Predict GO terms from Neighborhoods
CC	GO:0043025	neuronal cell body	IEP	Predict GO terms from Neighborhoods
BP	GO:0043053	dauer entry	IEP	Predict GO terms from Neighborhoods
BP	GO:0043111	replication fork arrest	IEP	Predict GO terms from Neighborhoods
CC	GO:0044297	cell body	IEP	Predict GO terms from Neighborhoods
CC	GO:0044815	DNA packaging complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0045005	DNA-templated DNA replication maintenance of fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045132	meiotic chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045191	regulation of isotype switching	IEP	Predict GO terms from Neighborhoods
BP	GO:0045724	positive regulation of cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0045830	positive regulation of isotype switching	IEP	Predict GO terms from Neighborhoods
BP	GO:0045911	positive regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0046626	regulation of insulin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0048478	replication fork protection	IEP	Predict GO terms from Neighborhoods
BP	GO:0050864	regulation of B cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050865	regulation of cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050867	positive regulation of cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050871	positive regulation of B cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051094	positive regulation of developmental process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051177	meiotic sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051225	spindle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051249	regulation of lymphocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051251	positive regulation of lymphocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051299	centrosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051301	cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051383	kinetochore organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0055046	microgametogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055115	entry into diapause	IEP	Predict GO terms from Neighborhoods
BP	GO:0060491	regulation of cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0061062	regulation of nematode larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061063	positive regulation of nematode larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061065	regulation of dauer larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061066	positive regulation of dauer larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061640	cytoskeleton-dependent cytokinesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0061775	cohesin loading activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061776	topological DNA co-entrapment activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061780	mitotic cohesin loading	IEP	Predict GO terms from Neighborhoods
BP	GO:0062022	mitotic cohesin ssDNA (lagging strand) loading	IEP	Predict GO terms from Neighborhoods
BP	GO:0070058	tRNA gene clustering	IEP	Predict GO terms from Neighborhoods
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0070550	rDNA chromatin condensation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071168	protein localization to chromatin	IEP	Predict GO terms from Neighborhoods
BP	GO:0071921	cohesin loading	IEP	Predict GO terms from Neighborhoods
BP	GO:0080175	phragmoplast microtubule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090307	mitotic spindle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0090329	regulation of DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
CC	GO:0097730	non-motile cilium	IEP	Predict GO terms from Neighborhoods
CC	GO:0098687	chromosomal region	IEP	Predict GO terms from Neighborhoods
BP	GO:0098813	nuclear chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0099111	microtubule-based transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0120032	regulation of plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0120033	negative regulation of plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0120034	positive regulation of plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140666	annealing activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902017	regulation of cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902018	negative regulation of cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902115	regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902116	negative regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902117	positive regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902850	microtubule cytoskeleton organization involved in mitosis	IEP	Predict GO terms from Neighborhoods
BP	GO:1902855	regulation of non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902856	negative regulation of non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902857	positive regulation of non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903046	meiotic cell cycle process	IEP	Predict GO terms from Neighborhoods
MF	GO:1990814	DNA/DNA annealing activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000104	negative regulation of DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013882	Ctp1_C	671	695

External Links

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SOLTUB.AGRIA.G00000002983

Expression Profile

Co-expression Networks

Functional Annotation