SOLTUB.AGRIA.G00000029234

Description : GATA type zinc finger transcription factor family protein

Gene families : OG_02_0024701 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029234
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_47

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0003279	cardiac septum development	None	Extended
BP	GO:0003281	ventricular septum development	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003779	actin binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005856	cytoskeleton	None	Extended
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0007015	actin filament organization	None	Extended
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015629	actin cytoskeleton	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0030018	Z disc	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034330	cell junction organization	None	Extended
MF	GO:0042805	actinin binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045216	cell-cell junction organization	IEA	AHRD
BP	GO:0045595	regulation of cell differentiation	IEA	AHRD
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048468	cell development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	IEA	AHRD
BP	GO:0048729	tissue morphogenesis	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	IEA	AHRD
MF	GO:0051015	actin filament binding	IEA	AHRD
BP	GO:0051017	actin filament bundle assembly	IEA	AHRD
MF	GO:0051393	alpha-actinin binding	IEA	AHRD
BP	GO:0055001	muscle cell development	IEA	AHRD
BP	GO:0055008	cardiac muscle tissue morphogenesis	IEA	AHRD
BP	GO:0060415	muscle tissue morphogenesis	None	Extended
BP	GO:0061572	actin filament bundle organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	IEA	AHRD
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002376	immune system process	IEP	Predict GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004351	glutamate decarboxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005516	calmodulin binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006536	glutamate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006538	glutamate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006885	regulation of pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0006955	immune response	IEP	Predict GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008236	serine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009063	cellular amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009065	glutamine family amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009505	plant-type cell wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0009605	response to external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009617	response to bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0009682	induced systemic resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009826	unidimensional cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0009860	pollen tube growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0009932	cell tip growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0016049	cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0016054	organic acid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016830	carbon-carbon lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016831	carboxy-lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0017171	serine hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030004	cellular monovalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0030641	regulation of cellular pH	IEP	Predict GO terms from Neighborhoods
CC	GO:0031012	extracellular matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0031152	aggregation involved in sorocarp development	IEP	Predict GO terms from Neighborhoods
BP	GO:0040007	growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0042742	defense response to bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043649	dicarboxylic acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045087	innate immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048588	developmental cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0048589	developmental growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0051453	regulation of intracellular pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0051454	intracellular pH elevation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0055067	monovalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0099120	socially cooperative development	IEP	Predict GO terms from Neighborhoods
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001781	Znf_LIM	104	159
IPR001781	Znf_LIM	10	64

External Links

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SOLTUB.AGRIA.G00000029234

Expression Profile

Co-expression Networks

Functional Annotation