Coexpression cluster: Cluster_47 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016020 membrane 49.18% (90/183) 0.8 0.0 3e-06
GO:0098590 plasma membrane region 9.84% (18/183) 2.46 0.0 8e-06
GO:0008092 cytoskeletal protein binding 9.84% (18/183) 2.41 0.0 8e-06
GO:0051015 actin filament binding 4.92% (9/183) 3.62 0.0 3.5e-05
GO:0009932 cell tip growth 8.74% (16/183) 2.36 0.0 5.7e-05
GO:0003779 actin binding 5.46% (10/183) 3.22 0.0 6.1e-05
GO:0031982 vesicle 16.39% (30/183) 1.48 0.0 0.000107
GO:0007015 actin filament organization 4.37% (8/183) 3.58 0.0 0.000109
GO:0048589 developmental growth 14.21% (26/183) 1.63 0.0 0.000116
GO:0031410 cytoplasmic vesicle 14.75% (27/183) 1.5 1e-06 0.00026
GO:0120025 plasma membrane bounded cell projection 10.93% (20/183) 1.8 1e-06 0.000289
GO:0042995 cell projection 11.48% (21/183) 1.75 1e-06 0.000294
GO:0097708 intracellular vesicle 14.75% (27/183) 1.46 2e-06 0.000339
GO:0040007 growth 14.75% (27/183) 1.45 2e-06 0.000348
GO:0022604 regulation of cell morphogenesis 7.1% (13/183) 2.3 3e-06 0.000408
GO:0051049 regulation of transport 12.02% (22/183) 1.63 3e-06 0.000418
GO:0009860 pollen tube growth 7.1% (13/183) 2.31 3e-06 0.000436
GO:0004672 protein kinase activity 13.11% (24/183) 1.52 4e-06 0.000479
GO:0097435 supramolecular fiber organization 6.01% (11/183) 2.49 5e-06 0.000563
GO:0006468 protein phosphorylation 12.02% (22/183) 1.58 5e-06 0.00059
GO:0005886 plasma membrane 26.23% (48/183) 0.94 5e-06 0.000591
GO:0004674 protein serine/threonine kinase activity 10.93% (20/183) 1.66 6e-06 0.000657
GO:0048588 developmental cell growth 8.74% (16/183) 1.92 6e-06 0.000679
GO:0010769 regulation of cell morphogenesis involved in differentiation 4.92% (9/183) 2.78 7e-06 0.000743
GO:0032879 regulation of localization 13.11% (24/183) 1.45 8e-06 0.000766
GO:0046777 protein autophosphorylation 9.29% (17/183) 1.8 9e-06 0.000835
GO:0051286 cell tip 4.92% (9/183) 2.75 9e-06 0.000837
GO:0051234 establishment of localization 22.95% (42/183) 0.98 1.1e-05 0.000877
GO:0016324 apical plasma membrane 4.92% (9/183) 2.72 1e-05 0.000892
GO:0060187 cell pole 4.92% (9/183) 2.68 1.3e-05 0.001
GO:0080092 regulation of pollen tube growth 4.37% (8/183) 2.91 1.3e-05 0.001021
GO:0016773 phosphotransferase activity, alcohol group as acceptor 13.11% (24/183) 1.39 1.5e-05 0.00115
GO:0060560 developmental growth involved in morphogenesis 10.93% (20/183) 1.55 1.9e-05 0.001387
GO:0006810 transport 21.86% (40/183) 0.98 2e-05 0.001388
GO:0016301 kinase activity 13.66% (25/183) 1.34 2e-05 0.001393
GO:0009826 unidimensional cell growth 9.29% (17/183) 1.69 2.4e-05 0.001536
GO:0005856 cytoskeleton 6.56% (12/183) 2.12 2.4e-05 0.001544
GO:0031224 intrinsic component of membrane 19.13% (35/183) 1.06 2.4e-05 0.001582
GO:0015629 actin cytoskeleton 3.28% (6/183) 3.38 2.6e-05 0.001609
GO:0030042 actin filament depolymerization 1.64% (3/183) 5.62 2.8e-05 0.001671
GO:0051179 localization 24.59% (45/183) 0.88 3e-05 0.001737
GO:0060627 regulation of vesicle-mediated transport 5.46% (10/183) 2.33 3.5e-05 0.001885
GO:0023056 positive regulation of signaling 9.29% (17/183) 1.65 3.4e-05 0.001886
GO:0044877 protein-containing complex binding 8.74% (16/183) 1.72 3.3e-05 0.001898
GO:0009506 plasmodesma 16.94% (31/183) 1.12 3.5e-05 0.001926
GO:0016772 transferase activity, transferring phosphorus-containing groups 14.21% (26/183) 1.25 3.7e-05 0.001935
GO:0005509 calcium ion binding 4.92% (9/183) 2.44 4.8e-05 0.002467
GO:0098772 molecular function regulator activity 8.74% (16/183) 1.67 5.1e-05 0.002542
GO:0051640 organelle localization 6.01% (11/183) 2.12 5.5e-05 0.002635
GO:0008154 actin polymerization or depolymerization 1.64% (3/183) 5.32 5.4e-05 0.002644
GO:0005911 cell-cell junction 16.94% (31/183) 1.08 5.7e-05 0.002668
GO:0030141 secretory granule 3.28% (6/183) 3.17 5.9e-05 0.002701
GO:0070161 anchoring junction 16.94% (31/183) 1.07 6.5e-05 0.002958
GO:0005484 SNAP receptor activity 2.19% (4/183) 4.18 7.1e-05 0.003145
GO:0090406 pollen tube 4.92% (9/183) 2.36 7.4e-05 0.00321
GO:0010119 regulation of stomatal movement 6.56% (12/183) 1.95 7.6e-05 0.003271
GO:2001257 regulation of cation channel activity 2.73% (5/183) 3.45 0.000102 0.004202
GO:0000149 SNARE binding 2.73% (5/183) 3.45 0.000102 0.004202
GO:0016310 phosphorylation 12.02% (22/183) 1.29 0.000106 0.004322
GO:0030427 site of polarized growth 4.37% (8/183) 2.47 0.00011 0.004401
GO:0016049 cell growth 10.93% (20/183) 1.36 0.000118 0.004545
GO:0140096 catalytic activity, acting on a protein 19.67% (36/183) 0.93 0.000116 0.004576
GO:0030674 protein-macromolecule adaptor activity 3.83% (7/183) 2.68 0.000125 0.004769
GO:0051668 localization within membrane 5.46% (10/183) 2.09 0.000135 0.00484
GO:0008093 cytoskeletal anchor activity 1.09% (2/183) 6.74 0.00013 0.004869
GO:0072657 protein localization to membrane 4.92% (9/183) 2.25 0.000134 0.004878
GO:0010647 positive regulation of cell communication 8.74% (16/183) 1.55 0.000134 0.004947
GO:0051510 regulation of unidimensional cell growth 4.92% (9/183) 2.23 0.000145 0.005095
GO:0040008 regulation of growth 11.48% (21/183) 1.29 0.000147 0.005101
GO:0030054 cell junction 18.03% (33/183) 0.96 0.000158 0.005421
GO:0051128 regulation of cellular component organization 13.11% (24/183) 1.18 0.000163 0.005488
GO:0005938 cell cortex 3.83% (7/183) 2.6 0.000175 0.005819
GO:0045055 regulated exocytosis 2.19% (4/183) 3.83 0.000185 0.006065
GO:0072659 protein localization to plasma membrane 3.28% (6/183) 2.85 0.000202 0.006551
GO:0019864 IgG binding 1.09% (2/183) 6.42 0.000216 0.006637
GO:0061026 cardiac muscle tissue regeneration 1.09% (2/183) 6.42 0.000216 0.006637
GO:0014731 spectrin-associated cytoskeleton 1.09% (2/183) 6.42 0.000216 0.006637
GO:0061024 membrane organization 6.01% (11/183) 1.9 0.000208 0.006638
GO:1902533 positive regulation of intracellular signal transduction 4.92% (9/183) 2.13 0.00024 0.007283
GO:0023061 signal release 2.19% (4/183) 3.67 0.000283 0.008481
GO:0006887 exocytosis 2.73% (5/183) 3.12 0.000294 0.008713
GO:0099503 secretory vesicle 3.83% (7/183) 2.46 0.000307 0.008972
GO:0098771 inorganic ion homeostasis 7.1% (13/183) 1.63 0.00033 0.009521
GO:0050801 ion homeostasis 7.65% (14/183) 1.55 0.000341 0.009621
GO:0046879 hormone secretion 1.64% (3/183) 4.47 0.000337 0.009623
GO:0016192 vesicle-mediated transport 7.65% (14/183) 1.54 0.000369 0.010279
GO:0060090 molecular adaptor activity 3.83% (7/183) 2.42 0.000373 0.010289
GO:0009504 cell plate 2.73% (5/183) 3.04 0.00038 0.010349
GO:0000919 cell plate assembly 2.19% (4/183) 3.51 0.000436 0.011484
GO:0043227 membrane-bounded organelle 47.54% (87/183) 0.43 0.000427 0.011499
GO:0005773 vacuole 10.38% (19/183) 1.25 0.000445 0.011598
GO:0016043 cellular component organization 26.23% (48/183) 0.68 0.000436 0.011602
GO:0110165 cellular anatomical entity 72.13% (132/183) 0.26 0.000477 0.012035
GO:0040012 regulation of locomotion 4.37% (8/183) 2.16 0.000469 0.012088
GO:0043269 regulation of ion transport 5.46% (10/183) 1.87 0.000475 0.012125
GO:0043231 intracellular membrane-bounded organelle 46.99% (86/183) 0.43 0.000487 0.012169
GO:0055080 cation homeostasis 6.56% (12/183) 1.65 0.000495 0.012242
GO:0071840 cellular component organization or biogenesis 27.32% (50/183) 0.65 0.000532 0.013008
GO:0000904 cell morphogenesis involved in differentiation 7.65% (14/183) 1.48 0.000578 0.013995
GO:0072658 maintenance of protein location in membrane 1.09% (2/183) 5.74 0.000599 0.01422
GO:0072660 maintenance of protein location in plasma membrane 1.09% (2/183) 5.74 0.000599 0.01422
GO:0005575 cellular_component 72.68% (133/183) 0.25 0.000619 0.014551
GO:0046903 secretion 3.83% (7/183) 2.29 0.000632 0.014718
GO:1990778 protein localization to cell periphery 3.28% (6/183) 2.51 0.000701 0.016162
GO:0031226 intrinsic component of plasma membrane 5.46% (10/183) 1.79 0.000724 0.016525
GO:0042805 actinin binding 1.09% (2/183) 5.57 0.000768 0.016735
GO:0051393 alpha-actinin binding 1.09% (2/183) 5.57 0.000768 0.016735
GO:0010959 regulation of metal ion transport 3.83% (7/183) 2.24 0.000764 0.016946
GO:0043168 anion binding 15.85% (29/183) 0.91 0.000761 0.017054
GO:0001726 ruffle 1.64% (3/183) 4.08 0.000755 0.017069
GO:0051924 regulation of calcium ion transport 2.73% (5/183) 2.78 0.000869 0.018761
GO:0012505 endomembrane system 4.92% (9/183) 1.87 0.000904 0.019169
GO:0032940 secretion by cell 3.28% (6/183) 2.44 0.000898 0.019221
GO:0042734 presynaptic membrane 1.09% (2/183) 5.42 0.000957 0.020123
GO:0050896 response to stimulus 50.27% (92/183) 0.38 0.000971 0.020233
GO:0023051 regulation of signaling 14.75% (27/183) 0.92 0.00099 0.020451
GO:1902531 regulation of intracellular signal transduction 7.1% (13/183) 1.45 0.001063 0.021782
GO:0023052 signaling 2.73% (5/183) 2.7 0.001086 0.022062
GO:0010646 regulation of cell communication 14.75% (27/183) 0.91 0.001101 0.022169
GO:0017022 myosin binding 2.19% (4/183) 3.11 0.001238 0.023924
GO:0051650 establishment of vesicle localization 2.19% (4/183) 3.11 0.001238 0.023924
GO:1900150 regulation of defense response to fungus 3.83% (7/183) 2.11 0.00129 0.02415
GO:0006873 cellular ion homeostasis 4.92% (9/183) 1.8 0.001262 0.024194
GO:1900426 positive regulation of defense response to bacterium 3.28% (6/183) 2.35 0.001232 0.024207
GO:0000902 cell morphogenesis 9.29% (17/183) 1.2 0.001273 0.024211
GO:0051648 vesicle localization 2.19% (4/183) 3.09 0.001285 0.024244
GO:0051649 establishment of localization in cell 9.29% (17/183) 1.2 0.001316 0.024271
GO:0005887 integral component of plasma membrane 3.83% (7/183) 2.12 0.001227 0.024305
GO:0051703 biological process involved in intraspecies interaction between organisms 3.83% (7/183) 2.12 0.001227 0.024305
GO:0048878 chemical homeostasis 10.38% (19/183) 1.12 0.001309 0.024327
GO:0032555 purine ribonucleotide binding 12.57% (23/183) 0.99 0.001366 0.024993
GO:2000773 negative regulation of cellular senescence 1.09% (2/183) 5.15 0.001395 0.025333
GO:0043167 ion binding 27.32% (50/183) 0.59 0.001408 0.02538
GO:0030695 GTPase regulator activity 2.73% (5/183) 2.61 0.001448 0.025514
GO:0060589 nucleoside-triphosphatase regulator activity 2.73% (5/183) 2.61 0.001448 0.025514
GO:0055082 cellular chemical homeostasis 5.46% (10/183) 1.65 0.001463 0.025592
GO:0051261 protein depolymerization 1.64% (3/183) 3.74 0.001495 0.025603
GO:0017076 purine nucleotide binding 12.57% (23/183) 0.98 0.001485 0.025608
GO:0090404 pollen tube tip 2.73% (5/183) 2.6 0.001484 0.025783
GO:0042221 response to chemical 34.43% (63/183) 0.5 0.001447 0.025877
GO:0051239 regulation of multicellular organismal process 14.75% (27/183) 0.88 0.001571 0.026713
GO:0060341 regulation of cellular localization 5.46% (10/183) 1.63 0.001645 0.026831
GO:0048638 regulation of developmental growth 7.65% (14/183) 1.32 0.001592 0.026872
GO:0071863 regulation of cell proliferation in bone marrow 1.09% (2/183) 5.04 0.001644 0.026984
GO:0071864 positive regulation of cell proliferation in bone marrow 1.09% (2/183) 5.04 0.001644 0.026984
GO:0030507 spectrin binding 1.09% (2/183) 5.04 0.001644 0.026984
GO:0009966 regulation of signal transduction 13.66% (25/183) 0.92 0.001614 0.027059
GO:2000241 regulation of reproductive process 9.84% (18/183) 1.12 0.001738 0.028152
GO:0097367 carbohydrate derivative binding 13.11% (24/183) 0.93 0.00185 0.029568
GO:0043410 positive regulation of MAPK cascade 2.73% (5/183) 2.53 0.001847 0.029712
GO:0046907 intracellular transport 8.2% (15/183) 1.24 0.001877 0.029803
GO:0055008 cardiac muscle tissue morphogenesis 1.09% (2/183) 4.93 0.001912 0.029949
GO:0060415 muscle tissue morphogenesis 1.09% (2/183) 4.93 0.001912 0.029949
GO:0032553 ribonucleotide binding 12.57% (23/183) 0.95 0.001945 0.030278
GO:0030659 cytoplasmic vesicle membrane 5.46% (10/183) 1.59 0.001964 0.030373
GO:0010857 calcium-dependent protein kinase activity 1.64% (3/183) 3.6 0.001991 0.030397
GO:0035838 growing cell tip 2.73% (5/183) 2.51 0.001981 0.030439
GO:0007267 cell-cell signaling 2.19% (4/183) 2.92 0.002012 0.030528
GO:0043408 regulation of MAPK cascade 3.28% (6/183) 2.18 0.002216 0.032387
GO:0007010 cytoskeleton organization 6.01% (11/183) 1.48 0.002158 0.032534
GO:0090050 positive regulation of cell migration involved in sprouting angiogenesis 1.09% (2/183) 4.83 0.002199 0.032537
GO:0016079 synaptic vesicle exocytosis 1.09% (2/183) 4.83 0.002199 0.032537
GO:0120009 intermembrane lipid transfer 1.09% (2/183) 4.83 0.002199 0.032537
GO:0009898 cytoplasmic side of plasma membrane 1.64% (3/183) 3.54 0.002214 0.032565
GO:0017157 regulation of exocytosis 2.19% (4/183) 2.87 0.002284 0.032779
GO:0019903 protein phosphatase binding 2.19% (4/183) 2.87 0.002284 0.032779
GO:0008104 protein localization 9.29% (17/183) 1.12 0.002264 0.032886
GO:0009524 phragmoplast 3.28% (6/183) 2.16 0.002418 0.0345
GO:0090049 regulation of cell migration involved in sprouting angiogenesis 1.09% (2/183) 4.74 0.002505 0.035119
GO:0099604 ligand-gated calcium channel activity 1.09% (2/183) 4.74 0.002505 0.035119
GO:0060043 regulation of cardiac muscle cell proliferation 1.09% (2/183) 4.74 0.002505 0.035119
GO:0022603 regulation of anatomical structure morphogenesis 7.1% (13/183) 1.31 0.002559 0.035657
GO:0006869 lipid transport 3.83% (7/183) 1.93 0.002604 0.035869
GO:0042592 homeostatic process 10.93% (20/183) 1.0 0.00259 0.03588
GO:0005884 actin filament 1.64% (3/183) 3.44 0.002707 0.037075
GO:0012506 vesicle membrane 5.46% (10/183) 1.53 0.002724 0.037104
GO:0051641 cellular localization 11.48% (21/183) 0.96 0.002795 0.037637
GO:0051656 establishment of organelle localization 3.83% (7/183) 1.91 0.002793 0.03782
GO:0051017 actin filament bundle assembly 1.64% (3/183) 3.42 0.00284 0.038024
GO:0070727 cellular macromolecule localization 9.84% (18/183) 1.05 0.00289 0.038068
GO:0015031 protein transport 7.1% (13/183) 1.29 0.002865 0.038151
GO:0043229 intracellular organelle 50.27% (92/183) 0.33 0.002889 0.038261
GO:0031201 SNARE complex 1.64% (3/183) 3.39 0.002976 0.038984
GO:0006796 phosphate-containing compound metabolic process 14.75% (27/183) 0.81 0.003118 0.040618
GO:0016021 integral component of membrane 14.21% (26/183) 0.82 0.003154 0.040641
GO:0050931 pigment cell differentiation 1.09% (2/183) 4.57 0.003175 0.040695
GO:0071702 organic substance transport 11.48% (21/183) 0.94 0.003153 0.040852
GO:0061572 actin filament bundle organization 1.64% (3/183) 3.35 0.003262 0.040932
GO:0061025 membrane fusion 2.19% (4/183) 2.73 0.003248 0.040971
GO:0006874 cellular calcium ion homeostasis 2.19% (4/183) 2.73 0.003248 0.040971
GO:0043087 regulation of GTPase activity 2.19% (4/183) 2.73 0.003248 0.040971
GO:0030234 enzyme regulator activity 6.01% (11/183) 1.4 0.003292 0.041104
GO:1904426 positive regulation of GTP binding 1.09% (2/183) 4.49 0.003537 0.042185
GO:1905099 positive regulation of guanyl-nucleotide exchange factor activity 1.09% (2/183) 4.49 0.003537 0.042185
GO:2001108 positive regulation of Rho guanyl-nucleotide exchange factor activity 1.09% (2/183) 4.49 0.003537 0.042185
GO:0008157 protein phosphatase 1 binding 1.09% (2/183) 4.49 0.003537 0.042185
GO:0030003 cellular cation homeostasis 4.37% (8/183) 1.71 0.003397 0.042188
GO:0015085 calcium ion transmembrane transporter activity 2.19% (4/183) 2.71 0.003431 0.042398
GO:0065008 regulation of biological quality 18.58% (34/183) 0.69 0.003456 0.042477
GO:0005829 cytosol 21.86% (40/183) 0.62 0.003482 0.04258
GO:0043226 organelle 50.27% (92/183) 0.32 0.003505 0.042648
GO:0030133 transport vesicle 2.73% (5/183) 2.31 0.003598 0.042694
GO:0022836 gated channel activity 2.19% (4/183) 2.68 0.003622 0.04277
GO:0006793 phosphorus metabolic process 14.75% (27/183) 0.78 0.003936 0.044713
GO:1901979 regulation of inward rectifier potassium channel activity 1.09% (2/183) 4.42 0.003918 0.044725
GO:0015757 galactose transmembrane transport 1.09% (2/183) 4.42 0.003918 0.044725
GO:0043536 positive regulation of blood vessel endothelial cell migration 1.09% (2/183) 4.42 0.003918 0.044725
GO:0043495 protein-membrane adaptor activity 1.09% (2/183) 4.42 0.003918 0.044725
GO:0086019 cell-cell signaling involved in cardiac conduction 1.09% (2/183) 4.42 0.003918 0.044725
GO:0086070 SA node cell to atrial cardiac muscle cell communication 1.09% (2/183) 4.42 0.003918 0.044725
GO:0007017 microtubule-based process 5.46% (10/183) 1.45 0.004051 0.045588
GO:0004683 calmodulin-dependent protein kinase activity 1.64% (3/183) 3.26 0.003881 0.045604
GO:0033036 macromolecule localization 10.38% (19/183) 0.97 0.004038 0.045656
GO:0005615 extracellular space 3.83% (7/183) 1.81 0.004104 0.045973
GO:1900424 regulation of defense response to bacterium 4.37% (8/183) 1.66 0.004204 0.04665
GO:0030029 actin filament-based process 2.73% (5/183) 2.25 0.004196 0.046778
GO:0005548 phospholipid transporter activity 1.64% (3/183) 3.15 0.00475 0.049722
GO:0048768 root hair cell tip growth 1.64% (3/183) 3.15 0.00475 0.049722
GO:1904062 regulation of cation transmembrane transport 2.73% (5/183) 2.21 0.004774 0.049757
GO:0032412 regulation of ion transmembrane transporter activity 3.28% (6/183) 1.97 0.004505 0.049766
GO:0072507 divalent inorganic cation homeostasis 2.73% (5/183) 2.22 0.004688 0.049948
GO:0042246 tissue regeneration 1.09% (2/183) 4.28 0.004735 0.049996
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_107 0.041 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_140 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_148 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_13 0.03 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_17 0.015 Orthogroups with 8 Potato genotypes Compare
Sequences (183) (download table)

InterPro Domains

GO Terms

Family Terms